Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_N20
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.40 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 222  KAFDKVWHNGLIYKLYNMGVPDRLVLIIRD 311
            KA+ KV  N +I+++Y MG  DR + +  D
Sbjct: 1542 KAYQKVEENEIIFEIYKMG--DRFIGLTSD 1569


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 373 HSRSPQGSXLSPLLFSLYINDIPR 444
           H RSPQ   ++P +  ++I+ +PR
Sbjct: 332 HFRSPQTHKMAPWVKRVFIHILPR 355


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 373 HSRSPQGSXLSPLLFSLYINDIPR 444
           H RSPQ   ++P +  ++I+ +PR
Sbjct: 332 HFRSPQTHKMAPWVKRVFIHILPR 355


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 373 HSRSPQGSXLSPLLFSLYINDIPR 444
           H RSPQ   ++P +  ++I+ +PR
Sbjct: 328 HFRSPQTHVMAPWVRRVFIHVLPR 351


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 373 HSRSPQGSXLSPLLFSLYINDIPR 444
           H RSP    +SP +  +++N +PR
Sbjct: 337 HFRSPSTHNMSPWVRQVFLNWMPR 360


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 674  TPXPPFAQSXCSTSPYRGPRRS 739
            TP P  AQ       YRGP  S
Sbjct: 1339 TPVPRLAQDSSEDESYRGPSAS 1360


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 323 VRQVVSYDEHESVWHSHVIQFVYQTVVPD 237
           ++ VV  DE  S W+   ++F Y   +PD
Sbjct: 623 IKSVVPSDE--SHWNDLAMEFYYNRSIPD 649


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 323 VRQVVSYDEHESVWHSHVIQFVYQTVVPD 237
           ++ VV  DE  S W+   ++F Y   +PD
Sbjct: 661 IKSVVPSDE--SHWNDLAMEFYYNRSIPD 687


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,592
Number of Sequences: 438
Number of extensions: 5348
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)