Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_N04
(859 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 24 2.1
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 23 2.7
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.8
M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 22 8.3
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 8.3
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 22 8.3
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 22 8.3
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 22 8.3
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 8.3
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 22 8.3
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 790 PXAPVLIAHITLITPKPFSNS 852
P AP+L+ H+T + P+ +S S
Sbjct: 882 PFAPLLLLHLTPLQPRFYSIS 902
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 23.4 bits (48), Expect = 2.7
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 646 PTGTVPN*TSTSSPR--PVPNYHELQPRYGTHTLTHHVPATSIRSGTVP 786
P G+V + ST S + YH + P G H + + A ++ G P
Sbjct: 489 PLGSVSSTESTCSGEVASLTEYHHVAPPSGHHASSAPLLAATLAGGLCP 537
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 441 RSCLSLKKQISYERNIKNSTRITNTNLDVES---HR*LQLQPRESNGNHLL 584
R C+ LK + N+KN I TNL VE L+ +P+E G +L
Sbjct: 55 RVCIKLKLSQLIDVNLKNQ--IMTTNLWVEQSWYDYKLRWEPKEYGGVKML 103
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 441 RSCLSLKKQISYERNIKNSTRITNTNLDVES---HR*LQLQPRESNGNHLL 584
R C+ LK + N+KN I TNL VE L+ +P+E G +L
Sbjct: 55 RVCIKLKLSQLIDVNLKNQ--IMTTNLWVEQSWYDYKLRWEPKEYGGVKML 103
>M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E30. ).
Length = 109
Score = 21.8 bits (44), Expect = 8.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 422 KNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQPRRRKPPLA 544
KN S EEK P + + + K++ + +Y RR+ L+
Sbjct: 14 KNGSPEEKRPRTAFSAEQLARLKREFAENRYLTERRRQQLS 54
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 673 STSSPRPVPNYHELQPRYGTHTLT 744
STSSP+P P L + T+T
Sbjct: 413 STSSPKPFPRRATLAQLHNFTTMT 436
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 651 RDGTELDQYLEPQTGAKLPRATTSIRNAYTN 743
RD TE ++ EP+ + L T N Y N
Sbjct: 68 RDRTERERSREPKIISSLSNKTIHNNNNYNN 98
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 21.8 bits (44), Expect = 8.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 651 RDGTELDQYLEPQTGAKLPRATTSIRNAYTN 743
RD TE ++ EP+ + L T N Y N
Sbjct: 68 RDRTERERSREPKIISSLSNKTIHNNNNYNN 98
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 666 IRYRPGGPSISKAADISGMPEKSMWFRS 583
I +PG ++S+ + SG S FRS
Sbjct: 19 IAIQPGSNALSRNVEASGQRSVSSGFRS 46
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.8 bits (44), Expect = 8.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 651 RDGTELDQYLEPQTGAKLPRATTSIRNAYTN 743
RD TE ++ EP+ + L T N Y N
Sbjct: 301 RDRTERERSREPKIISSLSNKTIHNNNNYNN 331
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 8.3
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = +3
Query: 651 RDGTELDQYLEPQTGAKLPRATTSIRNAYTNAPRTGHLYTVRY 779
RD E ++ EP+ + L T N Y N Y + Y
Sbjct: 290 RDRMERERSKEPKIISSLSNKTIHNNNNYNNYNNKKLYYNINY 332
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,596
Number of Sequences: 438
Number of extensions: 6338
Number of successful extensions: 34
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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