Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_N02
         (924 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0658 - 20366559-20367562,20367745-20367937                       30   3.0  
11_06_0477 + 24057677-24059099,24059556-24060448,24060456-240605...    29   3.9  
08_02_1448 - 27168389-27172021                                         29   5.2  
02_05_0040 + 25341418-25341810                                         29   5.2  
01_05_0141 - 18532695-18532709,18533255-18533365,18533585-185336...    29   5.2  
12_02_0954 - 24757417-24758214                                         29   6.9  
12_01_0645 - 5468344-5470266                                           28   9.1  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    28   9.1  

>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -3

Query: 337 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 158
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL   V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310

Query: 157 QGG 149
             G
Sbjct: 311 HPG 313


>11_06_0477 +
           24057677-24059099,24059556-24060448,24060456-24060578,
           24060995-24061036
          Length = 826

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 547 KTTAQCLAYNTTHYRDHFVQESWVRVS 467
           KTT     YN+T  R+HF   +WV VS
Sbjct: 203 KTTLARKIYNSTRIRNHFDTTAWVTVS 229


>08_02_1448 - 27168389-27172021
          Length = 1210

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 547 KTTAQCLAYNTTHYRDHFVQESWVRVS 467
           KTT   + YN T  RDHF  + W  VS
Sbjct: 204 KTTLAKMVYNDTRVRDHFQLKMWHCVS 230


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 392 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 294
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>01_05_0141 -
           18532695-18532709,18533255-18533365,18533585-18533617,
           18534011-18534140,18534219-18535660,18535990-18536358
          Length = 699

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 547 KTTAQCLAYNTTHYRDHFVQESWVRVS 467
           KTT   + YN +  R HF    W+ VS
Sbjct: 211 KTTIAQMVYNDSRVRKHFEHSGWIHVS 237


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 448 TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 317
           T +RPRP+  A  A+  A+       A+G      Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146


>12_01_0645 - 5468344-5470266
          Length = 640

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 553 VCKTTAQCLAYNTTHYRDHFVQESWVRVS 467
           V KTT   L YN    RDHF   +W+ V+
Sbjct: 232 VGKTTLAQLVYNDPRVRDHFDMVAWLCVT 260


>09_03_0058 +
           11950668-11950701,11951068-11951106,11951586-11951982,
           11952016-11952314,11953743-11956795
          Length = 1273

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -3

Query: 562 SHDVCKTTAQCLAYNTTHYRDHFVQESWVRVSLG 461
           S  V KTT   L +N    RDHF    W+ VS G
Sbjct: 477 SGGVGKTTLAILVFNERRVRDHFDLLIWICVSDG 510


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,767,023
Number of Sequences: 37544
Number of extensions: 457883
Number of successful extensions: 1300
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)