Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_N01
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    30   0.49 
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    27   3.5  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   3.5  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    26   6.1  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   8.1  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 280  KKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDMSHEEI 408
            KK+K Y  Q   SG   +   SIRK+C N+ +     + H  +
Sbjct: 1716 KKQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHAL 1758


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 21/89 (23%), Positives = 42/89 (47%)
 Frame = +1

Query: 178 FNKIISTLKLTSEVISGLYSHWRDVFEHVRSTAKKKKKHYADQNTSSGTPQERECSIRKS 357
           F+K++ST+   S  I+ L   WRD  +HV    ++       +  S     +        
Sbjct: 384 FSKMLSTI---SNEITNLQGDWRDQLDHV-EFLQEHLGPLEVELASVKVLYDNCFQAGIE 439

Query: 358 CNNVSVTSMEDMSHEEIVTSYVLAHVAQF 444
            N+ ++ S ED+ HE  +T+ ++A+  ++
Sbjct: 440 ENDYTMFSYEDLEHEFGITANIIANKIKY 468


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 722 IERVXLLVLNRVDFKISATIHSFMSWFTVL 633
           +E   LL  NR DFK+   I  F  WF  L
Sbjct: 34  VEPEQLLEKNRTDFKLMYVIVKFYRWFNNL 63


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -2

Query: 683 FKISATIHSFMSWFTVLVPYNXSSSHWLKNDSCRNYPLVMTDPLLRSKFHLRFALALISC 504
           F   ATI +F++    +  Y  + S   KN    N P+V+   +    F L  A  L +C
Sbjct: 215 FSFFATIFTFIAAVIAVATYRIAISELEKNIEILNIPIVLGKKIYAYSF-LSAAAGLAAC 273


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 361 NNVSVTSMEDMSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 486
           +N+SVT+   + +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,799
Number of Sequences: 5004
Number of extensions: 65299
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)