Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_N01
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0042 - 12731228-12731362,12731984-12732046,12732136-127322...    40   0.003
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     30   2.8  
10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184...    29   4.9  
02_01_0272 - 1816791-1816902,1817002-1817023,1817771-1817841,181...    29   4.9  
06_02_0017 - 10649527-10651183,10651264-10652363                       29   6.4  
11_06_0130 - 20408835-20411771                                         28   8.5  

>07_03_0042 -
           12731228-12731362,12731984-12732046,12732136-12732207,
           12732783-12732855,12732937-12733005,12733375-12733439,
           12733677-12734087,12734186-12734230,12734338-12734413,
           12734555-12734629,12735101-12735207,12736573-12736635
          Length = 417

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 24/78 (30%), Positives = 43/78 (55%)
 Frame = +1

Query: 160 TSFYLVFNKIISTLKLTSEVISGLYSHWRDVFEHVRSTAKKKKKHYADQNTSSGTPQERE 339
           TS Y +FNK+ STL   S V+SG ++  RD    V + AK+  + + D+ +SS + ++R 
Sbjct: 164 TSGYTLFNKLRSTLSSASPVLSGAFAKLRDT--RVSTYAKQGYEIFKDELSSSSSRKKRN 221

Query: 340 CSIRKSCNNVSVTSMEDM 393
            +   S   V  ++  ++
Sbjct: 222 HARHASAGTVEKSTRTEL 239


>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 295 YADQNTSSGTPQERECSIRKSCN-NVSVTSMEDMSHEE 405
           + D   SSG+P   E S+ K C+ ++S TS  D  ++E
Sbjct: 523 HEDMQASSGSPDGSEPSVNKICDGSISWTSRNDFEYKE 560


>10_08_0364 +
           17217631-17217833,17218134-17218308,17218391-17218474,
           17218561-17218802,17218883-17219108,17219246-17219325,
           17219408-17219492,17219665-17219796,17219927-17220040,
           17220123-17220170,17220413-17220497,17220722-17220834
          Length = 528

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +1

Query: 256 EHVRSTAKKKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDMSHEEIVTSYVLAHV 435
           + V +  +  +KHY +Q  +    +ER CS+ K   + +V+  E+  H  IV  +     
Sbjct: 42  QRVAAAKQYIEKHYKEQMKNLQDRKERRCSLEKKLADANVS--EEEQH-NIVKQFEKKET 98

Query: 436 AQFDCRRHHMA 468
                +RH M+
Sbjct: 99  EYMRMQRHKMS 109


>02_01_0272 -
           1816791-1816902,1817002-1817023,1817771-1817841,
           1817951-1818063
          Length = 105

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 229 LYSHWRDVFEHVRSTAKKKKKHYADQNTSSGTPQERE 339
           +YS W D  E V +  +    HY D N S     E E
Sbjct: 69  IYSEWIDECERVNNPEEDNANHYEDDNASRYRYDEEE 105


>06_02_0017 - 10649527-10651183,10651264-10652363
          Length = 918

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 250 VFEHVRSTAKKKKKHYADQNTSSGTPQERE 339
           +F +  S  KKK K++  QN  SG P++ E
Sbjct: 159 LFTYAVSKLKKKDKNHGKQNKDSGEPKDTE 188


>11_06_0130 - 20408835-20411771
          Length = 978

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +2

Query: 374 LPRWKI*ATKKSSHLTFWLMLPSLTVDVITWRLLTEIQHVTSYCKKLRQVQISSETSI 547
           LP+  + +TKK  H    ++L +LTV +++   +  + ++   C K R+ ++ + TSI
Sbjct: 715 LPQCSLKSTKKKKHQ---ILLIALTVCLVSTLAIFSLLYMLLTCHKRRKKEVPAMTSI 769


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,999,512
Number of Sequences: 37544
Number of extensions: 390525
Number of successful extensions: 811
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)