Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_M24
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 3.3
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 4.4
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 4.4
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 29 4.4
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 29 4.4
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 4.4
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 4.4
AF039047-11|AAB94230.1| 354|Caenorhabditis elegans Prion-like-(... 29 5.8
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 462 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 349
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = -3
Query: 602 RLGRSAEXRRTRVRIQ----SET*DDFRECHIKYIQFLRPHYIKI--LTR*NEHNARTST 441
R+ R+ RR+ R + S + D E + +R + +KI LT NE+ TS+
Sbjct: 510 RIARALIRRRSTTRPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGETSS 569
Query: 440 RPGTGRIRFPSKPDT 396
+PG R+ P+K DT
Sbjct: 570 QPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = -3
Query: 602 RLGRSAEXRRTRVRIQ----SET*DDFRECHIKYIQFLRPHYIKI--LTR*NEHNARTST 441
R+ R+ RR+ R + S + D E + +R + +KI LT NE+ TS+
Sbjct: 479 RIARALIRRRSTTRPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGETSS 538
Query: 440 RPGTGRIRFPSKPDT 396
+PG R+ P+K DT
Sbjct: 539 QPGRDRLAPPNKTDT 553
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -1
Query: 754 PTXIXXQQXVNRRHASLFITXIPVRASXSDRERRSYRIVPIAHETKPTRPYG*EDPRKXG 575
P + ++ R AS+ + P++ S+ E++ R PI+ KPT P + PRK
Sbjct: 593 PDSVWTKKAKERAAASVTVPKSPMQRRESE-EQKMNRFYPIS---KPTAPLDAKSPRKKK 648
Query: 574 ERGSGSSP 551
R S P
Sbjct: 649 TRHSEKPP 656
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -1
Query: 754 PTXIXXQQXVNRRHASLFITXIPVRASXSDRERRSYRIVPIAHETKPTRPYG*EDPRKXG 575
P + ++ R AS+ + P++ S+ E++ R PI+ KPT P + PRK
Sbjct: 790 PDSVWTKKAKERAAASVTVPKSPMQRRESE-EQKMNRFYPIS---KPTAPLDAKSPRKKK 845
Query: 574 ERGSGSSP 551
R S P
Sbjct: 846 TRHSEKPP 853
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = -3
Query: 602 RLGRSAEXRRTRVRIQ----SET*DDFRECHIKYIQFLRPHYIKI--LTR*NEHNARTST 441
R+ R+ RR+ R + S + D E + +R + +KI LT NE+ TS+
Sbjct: 510 RIARALIRRRSTTRPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGETSS 569
Query: 440 RPGTGRIRFPSKPDT 396
+PG R+ P+K DT
Sbjct: 570 QPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = -3
Query: 602 RLGRSAEXRRTRVRIQ----SET*DDFRECHIKYIQFLRPHYIKI--LTR*NEHNARTST 441
R+ R+ RR+ R + S + D E + +R + +KI LT NE+ TS+
Sbjct: 479 RIARALIRRRSTTRPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGETSS 538
Query: 440 RPGTGRIRFPSKPDT 396
+PG R+ P+K DT
Sbjct: 539 QPGRDRLAPPNKTDT 553
>AF039047-11|AAB94230.1| 354|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 51
protein.
Length = 354
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -2
Query: 447 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 292
+D + P P P Q H P +R NP P+ + P+ L L A H+GD
Sbjct: 53 VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,372,648
Number of Sequences: 27780
Number of extensions: 376976
Number of successful extensions: 1154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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