Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_M21
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    28   1.5  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   2.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   2.6  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   3.4  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   3.4  

>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
 Frame = -2

Query: 429 GVLNGDERFRHVTTLHAWNETPCA-RRYYRPRTASAQPSK**NNESSGFSATIVQSLFRS 253
           GV++  E+F      H W+  P   + Y +P   + +PS    +E + F  T ++  F  
Sbjct: 55  GVISYREKFP--MDYHIWHTAPSTGKTYLQPWNDAVEPSTYYIDEGT-FLRTGLK--FAY 109

Query: 252 YGSNLPTSLTYIILSTRGSSPWRPAA-DMGTNRRDISTYIPHLNFQGPQR 106
            G N+  + T         + W+ +  D GT+R D+S   P  NF   QR
Sbjct: 110 IGDNMDLAFT-------NHTDWKASKHDDGTHRVDLSQRKPANNFMATQR 152


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 481 YICQRITQVS*GQL--SEDRNLAWSKRAKTGLIXMFSTHRDCESTAY 615
           Y+C  +  +S G L  SED ++ W    K GLI  F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 654 WHXLXKLFILKGSIGRAFAVPMRTEH 577
           +H + +L  + GSI   FAVP++ EH
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEH 423


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 338 APLPPNRVSNETMKVVVFQRRSFNPYSEVTDPICRLPLPT 219
           A LPP+ + ++  + +  Q+RS   Y    DP+  + LPT
Sbjct: 702 AQLPPS-MQSDIQQQLRLQKRSITEYPSQLDPLFMVELPT 740


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 177 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 49
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,504,710
Number of Sequences: 5004
Number of extensions: 72820
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)