Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_M16
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.48 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   2.6  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   7.8  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    26   7.8  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   7.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 243 VRVHRADTGRSSDELDRQTTELERRGMGL-QHLAG 344
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 109 AECENATSLSLMIDSLLATYGRESP-PDSKI---VVNLTLHL 222
           A+C    +LS+ I + + TYG ++P P  K+   + N TLHL
Sbjct: 739 AQCICVRTLSVPIGAGMLTYGSKNPLPTEKVTPRLFNFTLHL 780


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 321 FPCVPTQSFVDPIHLKICQYPHGG 250
           F  +P Q+F    H+++C YP GG
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGG 170


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 257 TVDPDSRMLACLKCRVRLTTILESGGDSRPYVARSES 147
           T+DPDS  L   K     TT    G   RP  +R+ S
Sbjct: 146 TLDPDSSQLPTYKTEYSETTKFPLGKSYRPKASRTTS 182


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/78 (23%), Positives = 29/78 (37%)
 Frame = +1

Query: 202 VNLTLHLRHANIRESGSTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVL 381
           +N TL     N   +GST  +            L+W   +W  S W  +     +P    
Sbjct: 408 LNRTLPTDPPNFTNAGSTDPVAEPTAQLLPPDGLAWIDDKWSISPWTFTDTFWAQPAKTQ 467

Query: 382 LNAAATTAGDYALRARVS 435
              A T + ++  R RV+
Sbjct: 468 FRTAFTRSREWRRRYRVA 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,573
Number of Sequences: 5004
Number of extensions: 54157
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)