Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_M08
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.88 
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    28   1.5  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     28   2.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.5  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   8.2  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    26   8.2  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 633  PPLLPDVTLTLRKPTXNXCXARPSPPFXGKNLHP--ASGXRTPXDRQ 767
            PP  P  ++T   P      A P PP  G+  HP  ASG R P  +Q
Sbjct: 908  PPPPPTASMTASAPAI----ASPPPPKVGETYHPPTASGTRVPPVQQ 950


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 570 MQTSYRNKSYQPPRKLQFLRGPPLLPDVTLTLRKPTXNXCXARPSP 707
           M T   +K ++P + + F   PP  P    T  +P  +   + PSP
Sbjct: 381 MSTGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRPHSSSTDSPPSP 426


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 268 SLPTRTSPRCDAGSARSQSELFNDTSQS 351
           S+PT TSP  +  + RS + + N+T QS
Sbjct: 231 SVPTTTSPNNENNALRSTANVINNTRQS 258


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 568 PCKLLTATNLT-SHHANYNFYGVHLSYPMLLS 660
           PCKL+   N +  HH+NY + G  LSY + LS
Sbjct: 215 PCKLIDLHNDSFLHHSNY-YAGFGLSYYLYLS 245


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +1

Query: 169 PSNRNTPL---LHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFND 339
           P +RN P+   + G       T  +      P+  +S+   +SP   AG   + S LF+ 
Sbjct: 74  PHSRNPPIFEAIQGEQPSDIDTLNLKKVKSGPTSPSSIDRLSSPNAKAGDILA-SSLFSS 132

Query: 340 TSQSPTRRR 366
            S   T RR
Sbjct: 133 GSPPDTTRR 141


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -2

Query: 239 PSTARVPSPCLFLP*SSGVFRFEGWGSGCNYT----ETLELLSQGV 114
           P  A   S C   P +SG F     G  CN T    ETL  L+Q V
Sbjct: 150 PKNANSSSTCTRTPPTSGRFSIRHDGQVCNITIAAEETLRQLAQQV 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,812
Number of Sequences: 5004
Number of extensions: 57640
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)