Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_M08
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 34 0.13
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 31 0.93
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 31 0.93
10_08_0029 + 14270945-14271364,14271449-14272486 31 0.93
03_05_0847 + 28186873-28188147 31 0.93
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 29 3.7
02_05_0943 + 32976990-32976996,32977119-32977464,32977586-329777... 29 4.9
01_01_1137 + 9017211-9018584 29 4.9
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 29 6.5
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 28 8.6
02_02_0156 - 7277793-7277875,7278535-7278638,7278808-7279211,727... 28 8.6
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 34.3 bits (75), Expect = 0.13
Identities = 30/91 (32%), Positives = 41/91 (45%)
Frame = +1
Query: 157 PLPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFN 336
PLP P R TP H G R + TT PS T P+ +SP+C S +++ + +
Sbjct: 373 PLPAPCRRQTPHHHQVAALGARLRVEETTTTLPS--TPSPS-SSPQC--FSTQTRPLVAS 427
Query: 337 DTSQSPTRRRALAQVQPERGGSNIGSPCWRR 429
S TRR P S++ SP W R
Sbjct: 428 SNYGSSTRR--TRSTPPTSSASSMTSPRWCR 456
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 31.5 bits (68), Expect = 0.93
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Frame = +1
Query: 160 LPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFND 339
+P PS+ PLL G G +V G +T+ P +PR G+A L +
Sbjct: 369 VPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPPGAAMVPMMLPDG 428
Query: 340 ----TSQSPTRRRALAQVQPERGGSNIGS 414
Q P + LA P++ G GS
Sbjct: 429 RLVYVVQQPGGQLPLASPPPQQAGHRSGS 457
>11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 31.5 bits (68), Expect = 0.93
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Frame = +1
Query: 160 LPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFND 339
+P PS+ PLL G G +V G +T+ P +PR G+A L +
Sbjct: 777 VPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPPGAAMVPMMLPDG 836
Query: 340 ----TSQSPTRRRALAQVQPERGGSNIGS 414
Q P + LA P++ G GS
Sbjct: 837 RLVYVVQQPGGQLPLASPPPQQAGHRSGS 865
>10_08_0029 + 14270945-14271364,14271449-14272486
Length = 485
Score = 31.5 bits (68), Expect = 0.93
Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 4/131 (3%)
Frame = -2
Query: 605 WLVRFVAVRSLHGGKMSCESAQVAGGETS---AVAAHPVRENRADRLDGTEAGRRVRQTT 435
WL F+A + GG+ S E Q GG+ + VAA RE + + A
Sbjct: 7 WLRSFLAGKKDGGGRRSGERQQHGGGDATPAVEVAAASTREKKRWSFRRSSASASAAAMG 66
Query: 434 RPRLQHGLPILEPPRSGCTCARAR-RLVGDCEVSLNNSDCDRALPASQRGDVLVGKDVAP 258
+P EP SG R R V D E ++ A+ + GD + V
Sbjct: 67 KPAAVTAPSTPEPSVSGLASVSERARDVADLEGQSKHAMAVAAVATAAEGDDVSASAVEV 126
Query: 257 DGCSVVPSTAR 225
++ +T R
Sbjct: 127 VAAVMIQATYR 137
>03_05_0847 + 28186873-28188147
Length = 424
Score = 31.5 bits (68), Expect = 0.93
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 157 PLPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSG 261
PLP S+R+ P L R R+ DG VD P G
Sbjct: 161 PLPSMSSRDAPCLQMRPRRQDGRLIVDAVVVRPRG 195
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 810 SRRALKDKNFRAFVSGDPXXFGFRWPDAGFSRXRXG 703
S A+KD ++ DP F + P GFS R G
Sbjct: 735 SSLAMKDSGSEQNINRDPEAFNMKMPSPGFSNRRQG 770
>02_05_0943 +
32976990-32976996,32977119-32977464,32977586-32977796,
32977997-32978072,32978175-32978277,32978601-32978669,
32978785-32978821,32978904-32978978,32979052-32979103,
32979188-32979232,32979342-32979442
Length = 373
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 518 AVAAHPVRENRADRL--DGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCARARRLV 354
A A P EN + ++ D GR +T P QH L E SGCTC R++
Sbjct: 108 AAATVPPFENISPKMLADSMTLGRDNGRTREPVDQHSL---EENHSGCTCVAVPRII 161
>01_01_1137 + 9017211-9018584
Length = 457
Score = 29.1 bits (62), Expect = 4.9
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -2
Query: 584 VRSLHGGKMSCESAQVAGGETSAVAAHPVREN-RADRLDGTEA--GRRVRQTTRPRLQHG 414
++ L G + + +VAGG V AHP+ E+ R R+ G A G TR G
Sbjct: 264 IKRLQSGIRARAAGKVAGGRVVRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTR---CSG 320
Query: 413 LPILEPPRSGCTCARA 366
I RSG C RA
Sbjct: 321 EGIYFAARSGRLCGRA 336
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 253 PSGATSLPTRTSPRCDAGSARSQSELFNDTSQSPTRRRALAQVQPER 393
PS A + PTRTS R A SA + ++ ++ S T RR A+ +P +
Sbjct: 6 PSSAAA-PTRTSTRKRAASASASAKATDEPSTKRT-RRPKAETKPRK 50
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +1
Query: 154 QPLPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPT-RTSPRCDAGS 309
QP P P + P G N+Q G R DGT G T T+P +GS
Sbjct: 452 QPQPQPQPQPQPPA-GANKQPPGPRMPDGTRGFAMGRGKPQTSTTTPSASSGS 503
>02_02_0156 -
7277793-7277875,7278535-7278638,7278808-7279211,
7279403-7279543,7279700-7279904,7279984-7280093
Length = 348
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = +1
Query: 223 TRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQSPTRRRALAQVQPERGG 399
TR D +H S + + + A S + F+DTS + ++ V PE G
Sbjct: 182 TRQADSVLKHSSSSPGITSLGKGTSVGSGAASDLDNFSDTSDRQSEAGSMLSVDPEISG 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,287,062
Number of Sequences: 37544
Number of extensions: 495933
Number of successful extensions: 1678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1678
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -