Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_M08
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    31   1.4  
AF025460-2|AAF02169.3|  545|Caenorhabditis elegans Prion-like-(q...    30   1.9  
AC006675-8|AAK84554.1|  414|Caenorhabditis elegans Hypothetical ...    30   1.9  
AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear recep...    29   3.3  
AY204205-1|AAO39206.1|  141|Caenorhabditis elegans nuclear recep...    29   3.3  
AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear horm...    29   3.3  
AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear horm...    29   3.3  
Z82280-3|CAB05265.1|  387|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -2

Query: 398 PPRSGCTCARARRLVGDCEVSLNNSDCDRALPASQRGDVLVGKDVAPDGCSVVPSTARVP 219
           PP  GC C R +R V D E  + N D D      +  +VL     +    S+V   + +P
Sbjct: 59  PPMCGCGCGRKKRSVDDVE-GVINMDSDVECNNEELREVLENNMKSTPSDSLVSVRSNLP 117

Query: 218 SPCLFLP*SSGV 183
           +   F+  + G+
Sbjct: 118 TDQYFVTCTHGL 129


>AF025460-2|AAF02169.3|  545|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 41
           protein.
          Length = 545

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +1

Query: 163 PHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGA--TSLPTRTSPRCDAGSARSQSELFN 336
           P P   + P++ G  RQG   +A   TT   +     S+ T   P     SA +Q +  +
Sbjct: 94  PPPPASSAPIV-GAPRQGATPQAAPATTPATTSQHQQSIATPKPPVVRPPSAATQQQPVS 152

Query: 337 DTSQSPTRRRALAQVQPERGGS 402
            TSQ+  +++   Q+Q +R  +
Sbjct: 153 VTSQASQQQQQFQQIQQQRAAA 174


>AC006675-8|AAK84554.1|  414|Caenorhabditis elegans Hypothetical
           protein M02H5.4 protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 247 P*CHRP-HGYHHPAYFCREAVVYF 179
           P C++P HG H  AY CR   V+F
Sbjct: 23  PVCYKPPHGIHFGAYTCRACAVFF 46


>AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear receptor
           NHR-117 protein.
          Length = 477

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 241 CHRP-HGYHHPAYFCREAVVYF 179
           C++P HGYH  A+ CR    +F
Sbjct: 37  CYQPGHGYHFGAFICRACAAFF 58


>AY204205-1|AAO39206.1|  141|Caenorhabditis elegans nuclear receptor
           NHR-117 protein.
          Length = 141

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 241 CHRP-HGYHHPAYFCREAVVYF 179
           C++P HGYH  A+ CR    +F
Sbjct: 37  CYQPGHGYHFGAFICRACAAFF 58


>AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform b protein.
          Length = 477

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 241 CHRP-HGYHHPAYFCREAVVYF 179
           C++P HGYH  A+ CR    +F
Sbjct: 37  CYQPGHGYHFGAFICRACAAFF 58


>AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform a protein.
          Length = 435

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 241 CHRP-HGYHHPAYFCREAVVYF 179
           C++P HGYH  A+ CR    +F
Sbjct: 37  CYQPGHGYHFGAFICRACAAFF 58


>Z82280-3|CAB05265.1|  387|Caenorhabditis elegans Hypothetical
           protein R05A10.3 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 217 DGTRAVDGTTEHPSGATSLP 276
           D TR  DG+T++P G+T +P
Sbjct: 172 DYTRYTDGSTDYPGGSTDVP 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,138,423
Number of Sequences: 27780
Number of extensions: 365067
Number of successful extensions: 1033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)