Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_M07
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   8.6  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   8.6  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   8.6  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   8.6  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   8.6  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   8.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 167 GCGSRFSGSLSRNR 126
           GC SR S  +SRNR
Sbjct: 31  GCVSRISNRISRNR 44


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 684 PVIPINHYLGVLKTNXIEPRSYSIIPCTKYSSSIFSPL 571
           P   +N      KT  I  R++ ++    YS+S F+P+
Sbjct: 287 PFFCVNIVTSYCKT-CISGRAFQVLTWLGYSNSAFNPI 323


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 429 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 331
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 429 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 331
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 429 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 331
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 429 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 331
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 429 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 331
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,927
Number of Sequences: 438
Number of extensions: 5090
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)