Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_M04
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1668 - 28487357-28487838,28487933-28488101 32 0.49
02_02_0637 - 12491706-12492575,12492580-12492657 32 0.49
12_01_1078 - 11202284-11202343,11202941-11203000,11203036-112030... 32 0.64
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621 32 0.64
06_02_0035 + 10816723-10819497,10819964-10820011 30 2.6
01_06_1063 + 34194853-34195671 29 3.4
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 6.0
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060... 29 6.0
06_01_0887 + 6803937-6804030,6804101-6804204 29 6.0
01_01_0137 + 1249081-1249341,1249500-1250237 29 6.0
06_02_0155 + 12380452-12381012 28 7.9
>07_03_1668 - 28487357-28487838,28487933-28488101
Length = 216
Score = 32.3 bits (70), Expect = 0.49
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 483 GQPAPPAHHTPTVGFTLHH--PRPTASAGL 566
G PA PA PTV + HH P+P AGL
Sbjct: 173 GVPAVPAEEAPTVAYVHHHLPPQPQQDAGL 202
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/68 (30%), Positives = 27/68 (39%)
Frame = +2
Query: 398 PRRSWSVACKRSTPYALRSPSKWSRNNKRTTCTSSSPYTDGWFYVTPSTTYG*CRPSG*I 577
P SW + S P R+P R+ R T T+ SP+ W TP P+
Sbjct: 94 PASSWICGTEGSPPTRSRTPRSSRRSPARATSTTHSPFCHSW-RTTPWLPTSCSSPTSST 152
Query: 578 WKSKRRTR 601
S R TR
Sbjct: 153 SPSARATR 160
>12_01_1078 -
11202284-11202343,11202941-11203000,11203036-11203050,
11203322-11204026
Length = 279
Score = 31.9 bits (69), Expect = 0.64
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 492 APPAHHTPTVGFTLHHPRP 548
APP HH P + F HHP P
Sbjct: 15 APPLHHKPHLAFPPHHPSP 33
>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
Length = 388
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 414 PSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHTPTVGFTLHHPRP 548
P H + + + E + P P AHH PT +T H P P
Sbjct: 155 PGHDRAPTSAAPPSPAHAPELKKPPPPPEAHHRPTKSYTGHPPPP 199
>06_02_0035 + 10816723-10819497,10819964-10820011
Length = 940
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 211 PAARCR*CRNGNTATSATCPACRGQC 288
P A+ C TAT+ CPACR C
Sbjct: 363 PQAQTHGCCGWMTATARPCPACRSDC 388
>01_06_1063 + 34194853-34195671
Length = 272
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +3
Query: 438 RTPLEAHQNGAETTRGQPAPPAHHTPTVGFTLHHP 542
RTPL GA TT Q PP+ HTP TL P
Sbjct: 11 RTPL----GGAATTPDQLPPPSPHTPRPAITLTAP 41
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -1
Query: 430 PFACDGPRPSWKP*ARFSCLAVSRTTSIRSAPS*FTHPRHTASENSCNIAHG 275
PFA P PSW+P S ++ S S T PR + S S ++ G
Sbjct: 178 PFALQPPTPSWRPSTPPSAKTLTPPRRSPSPASTLTPPRRSPSPASRRMSTG 229
>11_06_0562 +
25003246-25003746,25004975-25005214,25005576-25006097,
25006184-25007248,25007350-25007656,25007761-25008001,
25008104-25008302,25008771-25008852,25008959-25009209,
25010061-25010219,25010220-25010603
Length = 1316
Score = 28.7 bits (61), Expect = 6.0
Identities = 29/85 (34%), Positives = 31/85 (36%)
Frame = +3
Query: 336 GADRIEVVLETARQLKRAHGFQEGRGPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 515
GAD A A G Q G GP G + GAET + Q APPA T
Sbjct: 51 GADGGSPASRAASPPTTAAGGQGGGGPVSGGGG------SAPGGAETAQRQGAPPAAVTS 104
Query: 516 TVGFTLHHPRPTASAGLLAEYGSRR 590
G PR AS GS R
Sbjct: 105 VQG----APRAPASTAATVPQGSPR 125
>06_01_0887 + 6803937-6804030,6804101-6804204
Length = 65
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 41 LLCSGNKQLSSAKSNVKFC 97
L+CSG K+L+S+ N KFC
Sbjct: 27 LMCSGYKELASSLRNKKFC 45
>01_01_0137 + 1249081-1249341,1249500-1250237
Length = 332
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 246 HCYLCDLPRMPWAMLHEFSEAVCRGCVNYEG 338
HC+ C LP P E + VC GC G
Sbjct: 73 HCHACLLPLKPPVFKCEAAHVVCSGCRGNHG 103
>06_02_0155 + 12380452-12381012
Length = 186
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +3
Query: 411 GPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHT 512
GP+ G H+ H GA G APPA T
Sbjct: 28 GPNDGDGGHKPSPPPHAGGAVNGNGGAAPPAPAT 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,842,492
Number of Sequences: 37544
Number of extensions: 434207
Number of successful extensions: 1463
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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