Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_M04
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical pr...    88   6e-18
Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical pr...    88   6e-18
Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical pr...    33   0.33 
Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical pr...    32   0.58 
Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical pr...    32   0.58 
AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.     32   0.58 
AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.     32   0.58 
Z74033-2|CAA98476.2|  419|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z74033-1|CAA98475.2|  460|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical...    29   5.4  
AC024214-13|AAM97984.1|  296|Caenorhabditis elegans Collagen pro...    28   9.4  

>Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical
           protein M04G12.1b protein.
          Length = 403

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 41/79 (51%), Positives = 52/79 (65%)
 Frame = +3

Query: 240 RQHCYLCDLPRMPWAMLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPS 419
           RQ CYLCDLPR PWA+++++ E VCRGCVNYEG+DRIE+VLE  RQ K+  G      P 
Sbjct: 49  RQQCYLCDLPRWPWAIINDYIEPVCRGCVNYEGSDRIELVLEETRQQKKLQGVGIS-DPQ 107

Query: 420 HAKGAHRTPLEAHQNGAET 476
           +AK + R      Q   +T
Sbjct: 108 NAKTSLRDITLTQQQPLQT 126


>Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical
           protein M04G12.1a protein.
          Length = 457

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 41/79 (51%), Positives = 52/79 (65%)
 Frame = +3

Query: 240 RQHCYLCDLPRMPWAMLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPS 419
           RQ CYLCDLPR PWA+++++ E VCRGCVNYEG+DRIE+VLE  RQ K+  G      P 
Sbjct: 76  RQQCYLCDLPRWPWAIINDYIEPVCRGCVNYEGSDRIELVLEETRQQKKLQGVGIS-DPQ 134

Query: 420 HAKGAHRTPLEAHQNGAET 476
           +AK + R      Q   +T
Sbjct: 135 NAKTSLRDITLTQQQPLQT 153


>Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical
           protein F07C6.1 protein.
          Length = 329

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 246 HCYLCDLPRMPWAMLHEFSEAVCRGCVNYEGADRI 350
           HC++CD   +   M+H F +A C  C    G D++
Sbjct: 262 HCFICDR-NVGGGMVHVFGKAFCPECYRCRGCDKV 295


>Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical
           protein C32A3.1b protein.
          Length = 468

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +3

Query: 390 HGFQEGRGPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHTPTVGFTLHHPRPTASAGL 566
           H  Q+ +    A+  H+   + HQ G     G P     H P  G   H P+PTA A +
Sbjct: 410 HQQQQAQQHQQAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYG-AHHMPQPTAFANI 467


>Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical
           protein C32A3.1a protein.
          Length = 490

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +3

Query: 390 HGFQEGRGPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHTPTVGFTLHHPRPTASAGL 566
           H  Q+ +    A+  H+   + HQ G     G P     H P  G   H P+PTA A +
Sbjct: 432 HQQQQAQQHQQAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYG-AHHMPQPTAFANI 489


>AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.
          Length = 468

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +3

Query: 390 HGFQEGRGPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHTPTVGFTLHHPRPTASAGL 566
           H  Q+ +    A+  H+   + HQ G     G P     H P  G   H P+PTA A +
Sbjct: 410 HQQQQAQQHQQAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYG-AHHMPQPTAFANI 467


>AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.
          Length = 490

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +3

Query: 390 HGFQEGRGPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHTPTVGFTLHHPRPTASAGL 566
           H  Q+ +    A+  H+   + HQ G     G P     H P  G   H P+PTA A +
Sbjct: 432 HQQQQAQQHQQAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYG-AHHMPQPTAFANI 489


>Z74033-2|CAA98476.2|  419|Caenorhabditis elegans Hypothetical
           protein F38B7.1b protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 410 WSVACKRSTPYALRSPSKWSRNNKRTTCTSSSP 508
           W++    STP++   PSKWS   + T+  +++P
Sbjct: 370 WNIEDSLSTPFSGFLPSKWSTTTEETSPATTTP 402


>Z74033-1|CAA98475.2|  460|Caenorhabditis elegans Hypothetical
           protein F38B7.1a protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 410 WSVACKRSTPYALRSPSKWSRNNKRTTCTSSSP 508
           W++    STP++   PSKWS   + T+  +++P
Sbjct: 411 WNIEDSLSTPFSGFLPSKWSTTTEETSPATTTP 443


>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
            protein F54C4.3 protein.
          Length = 1145

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 690  MDDDDHQSHHEPAKRLLEEHSRXPLTGGDSLPAVSLAXPFAPDR 821
            M DD H+ H  PAK  +  H +      D +P +S   P +P R
Sbjct: 915  MVDDQHEQHEIPAK--IPPHRQRLYQKLDPMPVISHELPRSPSR 956


>AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical
           protein F25G6.1 protein.
          Length = 560

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 38  CLLCSGNKQLSSAKSNVKFCVFICDYHGDSVFSRRHNKSV 157
           CLL  G   L      +      CDYH  S+ S ++ K V
Sbjct: 353 CLLMDGESSLGEYGKTLDVMTIRCDYHIFSLMSHKYGKPV 392


>AC024214-13|AAM97984.1|  296|Caenorhabditis elegans Collagen
           protein 106 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 408 RGPSHAKGAHRTPLEAHQNGAETTRGQPAPP 500
           RGP  AKG    P  A   G    RG P PP
Sbjct: 194 RGPPGAKGQTYLPGSAGHPGNSGRRGPPGPP 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,952,084
Number of Sequences: 27780
Number of extensions: 350267
Number of successful extensions: 1150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)