Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_L23
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    35   0.017
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    29   0.87 
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    29   1.1  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.6  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   8.1  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    26   8.1  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
 Frame = +3

Query: 441 CTCPEPLVLRRGHCVEPTCSPACDSYSSCTDFNVCTCVNNTIALNGS--QCAPVCPDGYY 614
           C  P PL+   G C  P C+   + +  C   ++    +N   +N    +C  VC +   
Sbjct: 290 CEHPCPLLCHPGPC--PPCTATVEKFCLCGKESIHARCSNISKVNTEPFRCENVCDELLP 347

Query: 615 NDPVECSPRCERCVNGTCTEPGLCTCDSG 701
                C  RC   + G C EP    C  G
Sbjct: 348 CGEHTCKKRCHSGLCGACFEPINAKCYCG 376


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 109 RSDAIVYRAHRN*NRNLNVFSKEPC 35
           RSD   YRA R  N N++ F++ PC
Sbjct: 249 RSDGASYRAIRVNNENIDAFTESPC 273


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 85  LCKRSRRNANIELCCVEMFYQFCYSSSANDHCFVMP 192
           LCK+  RNA    CC ++F + C  ++  D  F  P
Sbjct: 284 LCKKLARNACRTPCCDKLFCEECIQTALLDSDFECP 319


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 687 TCDSGYKNIDDVCVPQCLDCRNGXC 761
           TC+S  K+   +C+ QC  C +  C
Sbjct: 75  TCESCKKHTCAICIRQCHKCESNVC 99


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/66 (21%), Positives = 26/66 (39%)
 Frame = +3

Query: 210 VATVDVPVIRQRTRLVYNKKRCRGKTNSGSCVITESYVSIEKSQSCKTGWIYEAKTDSCV 389
           V + +   +R  T + Y    C+    +G C   ++   +   +  K GW  + + DS  
Sbjct: 169 VLSSNASTVRMNTIIDYQPDVCKDYKLTGYCGYGDTCKFLHMREDYKAGWQLDREWDSVQ 228

Query: 390 PKCTSG 407
            K   G
Sbjct: 229 EKYKKG 234


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 442 HTSGASQVPFTHPLVHFGTQLSVFA-SYIQPVLHD*LFSMLTYDSV 308
           ++  ASQ P T+P  H   Q+S     Y  P L D   S+L  D +
Sbjct: 18  NSQNASQPPETYPFYHEVRQMSQHPWMYEDPELQDYALSILPLDKL 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,336
Number of Sequences: 5004
Number of extensions: 62374
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)