Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_L20
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.62 
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    27   3.3  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   5.8  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   7.6  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 344 KRPPTYATPLMSPYNARLESSSTGSSFPADSPKPV 240
           K+PP  A P      AR  S+S+G S P   P PV
Sbjct: 220 KKPPPPAPPKPRRLAARTSSNSSGVSSPTSVPPPV 254


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 347 AKRPPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVV 225
           AK+PPT     +S  N  L+ ++  +  P+  P+ +P+A V
Sbjct: 308 AKQPPTMPANAISQANRLLDQNNIPNMDPSILPQSMPIASV 348


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 338 PPTYATPLMSPYNARLESSSTGSSFPADSPK 246
           P + +T    PY A  + ++TGSSF AD  K
Sbjct: 247 PVSTSTTSSQPYGAFHQPATTGSSFVADKWK 277


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 592 PLGHLRYSLTDVPPQSNSPPGS-VLEPDHA 506
           P  HLR S+  V   S SPP S  L+P H+
Sbjct: 166 PFAHLRSSMPLVMANSLSPPSSRALKPIHS 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,683
Number of Sequences: 5004
Number of extensions: 60321
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)