Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_L20
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        26   0.38 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    24   2.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   8.1  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 649 GSSQLCPFAPREXSVLAELPLGHLRYSLTDVPPQSNSPPGSVLEPDHAG 503
           G+ Q C  +P   S+ + L    +  +  +   Q NSP  +   P H+G
Sbjct: 25  GTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 408 LPPNRVSNETMKVVVFQRRSRETTSHLCYTSHVSLQCQTRVKLNRVFFP 262
           +PP  V     K +V   R+ E T   C  ++  +QC  +    + FFP
Sbjct: 97  MPPEEVV--IGKEIVAVCRNEEYTGDDCQKTYQYVQCHYKQNPEKFFFP 143


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 352 SSLKNHYFHCFITYSVGRK 408
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 365 FFSDDRAKRPPTYATPLMSPY 303
           F    R   PPT  TPL+S Y
Sbjct: 258 FLMTIRESLPPTEKTPLISLY 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,828
Number of Sequences: 438
Number of extensions: 4642
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)