Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_L17
         (814 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.          27   0.59 

>BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.
          Length = 673

 Score = 26.6 bits (56), Expect(2) = 0.59
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = -2

Query: 711 PPPPPXXXXXXXXXXXXXXXXXXXXXPPPPPP 616
           PPPPP                     PPPPPP
Sbjct: 47  PPPPPPVGSMGALTAAFPFAALPPPPPPPPPP 78



 Score = 26.6 bits (56), Expect(2) = 1.0
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = -2

Query: 711 PPPPPXXXXXXXXXXXXXXXXXXXXXPPPPPP 616
           PPPPP                     PPPPPP
Sbjct: 48  PPPPPVGSMGALTAAFPFAALPPPPPPPPPPP 79



 Score = 26.2 bits (55), Expect(2) = 0.59
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 633 PPPPPPXXXXXXXXGGGGGGXXXXXKKK 550
           PPPP P          GGGG     K+K
Sbjct: 116 PPPPQPPRKDQQPGPAGGGGDFPSKKRK 143



 Score = 25.4 bits (53), Expect(2) = 1.0
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 633 PPPPPPXXXXXXXXGGGGGGXXXXXKKK 550
           PPP PP         GGGG      +K+
Sbjct: 117 PPPQPPRKDQQPGPAGGGGDFPSKKRKR 144


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,465,456
Number of Sequences: 237096
Number of extensions: 2666353
Number of successful extensions: 18429
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11692
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)