Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_L17
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    31   0.74 
U13070-20|AAN63418.1|  641|Caenorhabditis elegans Hypothetical p...    29   4.0  
U13070-18|AAC46635.2|  646|Caenorhabditis elegans Hypothetical p...    29   4.0  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = +2

Query: 575 PPPPPPXXXXXXXXGGGGGGXXXXXXXXXXXXXXXXXXXXXGGGGG 712
           PPPPPP        GGGGGG                     GGGGG
Sbjct: 54  PPPPPP--ACGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGG 97



 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = +2

Query: 575 PPPPPPXXXXXXXXGGGGGGXXXXXXXXXXXXXXXXXXXXXGGGGG 712
           PPPPPP        GGGGGG                     GGGGG
Sbjct: 111 PPPPPP--ACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGG 154



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = -2

Query: 633 PPPPPPXXXXXXXXGGGGGGXXXXXKKKXXXXXXXGXXXFXXXXGXGGG 487
           PPPPPP        GGGG G               G        G GGG
Sbjct: 111 PPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGG 159



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 633 PPPPPPXXXXXXXXGGGGGG 574
           PPPPPP        GGGG G
Sbjct: 54  PPPPPPACGGGCGGGGGGCG 73


>U13070-20|AAN63418.1|  641|Caenorhabditis elegans Hypothetical
           protein F01F1.1c protein.
          Length = 641

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = -2

Query: 711 PPPPPXXXXXXXXXXXXXXXXXXXXXPPPPPPXXXXXXXXGGGGG 577
           PPPPP                     PPPPP         G GGG
Sbjct: 81  PPPPPQQSAVNATAQAAYNQASFNYAPPPPPQNWNNGYGRGRGGG 125


>U13070-18|AAC46635.2|  646|Caenorhabditis elegans Hypothetical
           protein F01F1.1a protein.
          Length = 646

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = -2

Query: 711 PPPPPXXXXXXXXXXXXXXXXXXXXXPPPPPPXXXXXXXXGGGGG 577
           PPPPP                     PPPPP         G GGG
Sbjct: 86  PPPPPQQSAVNATAQAAYNQASFNYAPPPPPQNWNNGYGRGRGGG 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,950,899
Number of Sequences: 27780
Number of extensions: 316320
Number of successful extensions: 2799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1670
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)