Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_L14
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 31 1.2
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834... 30 2.0
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 4.7
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973... 29 4.7
11_01_0022 + 151233-151515,152632-152852,153579-153656,154558-15... 29 6.2
03_05_0431 + 24221881-24224586 29 6.2
02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657... 29 6.2
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 28 8.2
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 165 SSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 305
SS DRS+ P P+ +R PH + SG+ +K S S+ + + P P
Sbjct: 849 SSQPADRSAPPPPASPDRHSRRSPH-RSSGSGKKRSSSDRYDDLPLP 894
>12_02_0667 +
21682386-21682944,21683042-21683201,21683419-21683467,
21683570-21683683,21683794-21684294,21684594-21684980,
21685074-21685172,21685380-21685478,21685817-21685890,
21686387-21687023
Length = 892
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 354 AKESDGTNGGGVCAPTTEW---DARSDVRRATPFEE 256
++E G GGG P ++ D+RS RR+T F+E
Sbjct: 3 SREESGNGGGGGATPAADYRSSDSRSSSRRSTRFKE 38
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +1
Query: 139 YSCRKMSLLHRRLQIA----VATLGQWFRKWRIDINPTKSAAVLFKRGR 273
+S L+HR L A VA + R WR + P + AA L RGR
Sbjct: 89 FSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR 137
>01_01_1209 -
9738501-9738516,9738703-9739161,9739389-9739608,
9739708-9739831,9739927-9740635,9741826-9742132,
9742213-9743704
Length = 1108
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 18 PPESRKAPRSPRLLFSLYINDIPRXSGDPSSA 113
PP+ R+ RL FSL + D R DPSSA
Sbjct: 26 PPQPEPPLRADRLAFSLEVPDPFRREPDPSSA 57
>11_01_0022 +
151233-151515,152632-152852,153579-153656,154558-154674,
155970-156316,156504-157032
Length = 524
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 615 NLKGFQVGAGCVSEHYACVR 556
N +QVG GC+S+ Y C+R
Sbjct: 348 NATNYQVGTGCLSDIYFCLR 367
>03_05_0431 + 24221881-24224586
Length = 901
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 452 ARSRTVFIWG-RNVIPLSRVTPRYLTFETHGMG 357
AR+RTVF WG +V + + PR + F++ G G
Sbjct: 175 ARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAG 207
>02_05_1213 -
34963971-34964658,34965030-34965270,34965347-34965736,
34966515-34966781,34966881-34967249,34967931-34968014,
34968113-34968226,34969952-34970018
Length = 739
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 420 PSPYKNGTRPRRVYSRTTLSNAL*SKQTAPPQ*GNSLQNLHTPRHDVRKRSVRSRSPHPL 599
P+P+ +G+ R+ +S A + +P G + H P H +R SP P
Sbjct: 29 PAPHPSGSPDTRILG-PRISPAFSPRAMSPESTGGPV---HPPSHKHHRRPYHPHSPSPS 84
Query: 600 EIPSG 614
+P G
Sbjct: 85 PLPQG 89
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +3
Query: 174 TPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 305
+P RS H P + QP+ S LQ P H +P P
Sbjct: 45 SPSRSFHGYPSAPPPQPQPQPYAHHSAPLQPYPPPPQHHAYPPP 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,861,570
Number of Sequences: 37544
Number of extensions: 515383
Number of successful extensions: 1386
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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