Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_L13
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.009
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.016
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.34 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.2  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   5.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = -2

Query: 421 PPFXKKKXXXAPPXGXGKXXXX-GXPPPPPRGXKXXXXXXPPXXXNPPXPP 272
           PP   ++    PP G G        PPPPPR         PP   + P PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 30.3 bits (65), Expect = 0.34
 Identities = 27/94 (28%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
 Frame = -2

Query: 511 PPPPXXGGXGXAXXXXXXXGGXLXPXXGGAPPFXKKKXXXAPPXGXGKXXXXGXPPPPPR 332
           PPPP     G            L P     PP         P    G+      PPPPPR
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPP---PPPRSNAAGSIPLPPQGRS---APPPPPPR 367

Query: 331 GXKXXXXXXPP-----XXXNPPXPPXG--GXXAP 251
                    PP        NPP PP    G  AP
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/52 (30%), Positives = 18/52 (34%)
 Frame = +2

Query: 116 NGKTQXPXXPXKXPPPPXXKXXGFPPXSXXXXXNPAPPFXKXXXXGGXXPPP 271
           NG +     P   PPPP     G  P        P PP  +     G  PPP
Sbjct: 329 NGSSNSSLPPP--PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
 Frame = +2

Query: 155 PPPPXXKXXGFPP---XSXXXXXNPAPPFXKXXXXGGXXPPPGG 277
           PPPP  +  G PP    S      P PP  +    G    PP G
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 356 GXPPPPPPXEXKXXXGXPPXXXKPPPXPXGG 264
           G PPPPPP       G PP    PP    GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 29.9 bits (64), Expect = 0.45
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -1

Query: 350 PPPPPPXEXKXXXGXPPXXXKPPPXPXGGGXXP 252
           PPPPPP          P    PPP P  GG  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPV-PPPAPIMGGPPP 763



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/50 (28%), Positives = 16/50 (32%)
 Frame = +2

Query: 122 KTQXPXXPXKXPPPPXXKXXGFPPXSXXXXXNPAPPFXKXXXXGGXXPPP 271
           K+  P  P    P P       PP +      P PP        G  PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +1

Query: 484 PPPRXXGGGXPPXXXPXXXXGGXXXXXPP 570
           PPP    GG PP   P    G      PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -1

Query: 356 GXPPPPPPXEXKXXXGXPPXXXKPPPXPXG 267
           G PPPPPP       G  P    PPP P G
Sbjct: 7   GNPPPPPPPP-----GFEPPSQPPPPPPPG 31


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = +1

Query: 253 GXXPPPXGXGGGXXXXGGXPKXXFXSXGGGGGGXPXXXXFPXXXGGRPXXF 405
           G  PP  G  GG    GG         GG GGG       P   GG P  F
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHH-GGHGGFGGGPGGFEGGPGGFGGGPGGF 247



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 268 PXGXGGGXXXXGGXPKXXFXSXGGGGGGXPXXXXFPXXXGG 390
           P G  GG    GG P       GG GGG       P   GG
Sbjct: 230 PGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 274 GXGGGXXXXGGXPKXXFXSXGGGGGGXPXXXXFPXXXGGRP 396
           G GGG     G P       GG GGG       P   GG P
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +2

Query: 425  PPXXGXEXXPPXGXXXXXAPXPPXXGGGGXXPXPXXXXXXGXAPXXAPP 571
            PP       PP       AP  P   G    P P        AP  APP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = -1

Query: 347 PPPPPXEXKXXXGXPPXXXKPPPXPXGGGXXP 252
           PP P  E +     PP    PPP P      P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 347  PPPPPXEXKXXXGXPPXXXKPPPXP 273
            PPPPP         PP    PP  P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAP 1731


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +1

Query: 274 GXGGGXXXXGGXPKXXFXSXGGGGGGXPXXXXFPXXXGGRP 396
           G  G     GG P       GGGG G       P   G RP
Sbjct: 157 GGFGTRTRGGGMPGGFANMFGGGGAGPHARRSHPSFGGSRP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.151    0.528 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,875
Number of Sequences: 5004
Number of extensions: 31761
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)