Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_L10
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.54
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 31 1.2
07_03_1361 - 25998873-25999223,25999311-25999461,25999546-259997... 31 1.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.2
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.8
03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497... 29 5.0
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.0
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.8
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.8
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.54
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 317 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 153
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = -1
Query: 444 SKRXIPGDGAVXRYTGAESRSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPLRSNSVVC 265
S + P D R + +SRSPRR P R + + R+PA S P+R++S
Sbjct: 208 SPKGSPRDTQSPRGSPRDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADSRSP 267
Query: 264 RSNSFEDLPVSA 229
+ D+ +A
Sbjct: 268 ADHERRDMSTAA 279
>07_03_1361 -
25998873-25999223,25999311-25999461,25999546-25999783,
25999898-26000108,26000210-26000340,26000909-26001037,
26001329-26002130
Length = 670
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 385 TALRARVSXNGSVSWDXALGHXHSXFLCS*TIGPATCRLARSSSVSRMH 531
TA AR G +S+D +S C+ + P CR + ++++MH
Sbjct: 172 TAAAARRFGTGEISFDPTYPVIYSMAWCTPDMAPGRCRACLADTIAQMH 220
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 215 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 331
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 230 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 141
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>03_05_0361 -
23448459-23448910,23448990-23449406,23449542-23449735,
23449854-23449902,23450155-23450539,23450578-23450874,
23451650-23451961
Length = 701
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = -1
Query: 423 DGAVXRYTGAESRSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPLRSNSVVCRSNSFED 244
DG +YT E + +Q LA P +A VP T + +N CR+NS +
Sbjct: 361 DGTEGQYTSDEDDAIIAMMQEILAAPPRAPRRVP-TQFGITWMLETMANPAQCRNNSSRE 419
Query: 243 LPVSARWTRTH 211
+ RW R++
Sbjct: 420 --SNNRWVRSN 428
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +1
Query: 661 PXWAXXPXXLSRKXGPXXPXXXGXLPXXXXGAPXXCPXXXGXPXPPXPXPPGFXRG 828
P A P K P P G P P P G PP P PPG +G
Sbjct: 321 PAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPP-PPPPGGKKG 375
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 102 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 257
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 344 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 177
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,719,778
Number of Sequences: 37544
Number of extensions: 443183
Number of successful extensions: 1418
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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