Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_L03
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   8.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   8.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   8.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
 Frame = -1

Query: 677 TNQPQHPSAGHGEAH----PRSLNTSRANNHH 594
           T  P H + GHG +H    P   ++  A  HH
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHH 442


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 672 STTTSQRWSRGSTPTKPQHFTCQQPPHQTNRV 577
           +TTT+   +  +TP   Q+ +   PP Q + V
Sbjct: 665 TTTTTTTTTTTTTPNTTQNASATTPPPQVDEV 696


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 426 LTECSLDLVSKSTRCETSRNR-RSTG 352
           ++ECSL   S ++   +SRN  RS G
Sbjct: 173 VSECSLGTASSTSSTASSRNSDRSAG 198


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +1

Query: 19  FASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNF-QMETYVYKR 195
           FAS   YT   +   S T+  G+  +AL+   +T+ L  +  L + N+N+   E +V  +
Sbjct: 229 FASDPRYTTFTINGESFTLQSGIFGMALS--PLTQNLYYSA-LSSHNLNYVNTEQFVKSQ 285

Query: 196 -RADGTH 213
            +A+  H
Sbjct: 286 YQANNVH 292


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 637 HTHEASTLHVPTTTTS 590
           H H A   H+P T TS
Sbjct: 105 HPHTAMVTHLPQTLTS 120


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +1

Query: 442 VLDPAQDHQPITEASYVNIPVIALCNTDSP 531
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,234
Number of Sequences: 438
Number of extensions: 5588
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)