Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_K24
         (957 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    46   4e-05
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    40   0.003
Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    29   6.5  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    29   6.5  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = +3

Query: 36  LVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXI 161
           L++ + +FLSNRSFR R+  T S  +  T GVPQG+ LSP +
Sbjct: 46  LLIWVNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLL 87



 Score = 37.1 bits (82), Expect = 0.019
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 157 LLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRID 330
           LLF +Y+NDI       +A   FADDT +Y S  K       LQ A+  +  W +  ++ 
Sbjct: 86  LLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALDAVVDWTKGSKLT 144

Query: 331 INPTKSAAVLFKRGR 375
           +N +K+  V   + R
Sbjct: 145 LNQSKTVHVTVGKRR 159


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 29/125 (23%), Positives = 56/125 (44%)
 Frame = +1

Query: 160 LFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINP 339
           LF+ Y+ D+P   +T L  +ADD +I    +K+     ++Q+ +  + ++ ++  + I+ 
Sbjct: 543 LFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISA 602

Query: 340 TKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMT 519
            KS   +F         S  P   +         I     PIP ++  K LG+TL+    
Sbjct: 603 EKSTVTVF---------SCDPKEHK-----TKPDIYWMDDPIPVINAPKLLGITLNTMTG 648

Query: 520 FRPHI 534
            + H+
Sbjct: 649 TKDHV 653



 Score = 31.5 bits (68), Expect = 0.92
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 21  GVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXII*F 170
           G+  ++ L + ++L  R  R   +   S+   L  GVPQGS +SP +  F
Sbjct: 497 GIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTF 546


>Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical
           protein C43C3.3 protein.
          Length = 446

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
 Frame = +1

Query: 13  TTWECQTDSCSSYE-TSCRTVRFDIE*RELVLVPVN*P-----PESRKAPRSPRLLFSLY 174
           TT    TD   S + T+  TV   IE  ELV  P++ P     P  ++    P+     +
Sbjct: 317 TTRSAPTDDNGSLDLTNSLTVVSRIESAELVASPISQPTIVDTPSEQRRDPCPKSSNMGF 376

Query: 175 INDIPRSPETHLALFADDTAIYYSCRKMSL 264
           I  I       L LF+   AIY+ C+  S+
Sbjct: 377 IPLIIMGSLASLLLFSAGAAIYFGCKLKSM 406


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 6   ELYNMGVPDRLVLIIRDFLSNRSFRYRVEG-TRSRPRQLTAGVPQGSALSPXI 161
           +L++ G+         DFLS+R+F  +V          +++GVP+GS   P +
Sbjct: 15  KLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPFL 67


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 51  RDFLSNRSFRYRVEGTRSRPRQ-LTAGVPQGSALSPXI 161
           ++FL NR+F  ++    S+    +++GVPQGS   P +
Sbjct: 854 KEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLL 891


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,181,792
Number of Sequences: 27780
Number of extensions: 400635
Number of successful extensions: 954
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)