Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_K23
(908 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 33 0.24
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.55
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.3
07_01_0469 - 3552409-3553368 31 1.7
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.2
08_01_0059 - 394001-394708 30 2.2
03_02_0283 - 7078754-7078856,7079358-7079431,7079995-7080090,708... 30 2.2
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 30 2.9
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.9
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 3.9
11_06_0610 - 25449085-25453284 28 8.9
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.9
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195... 28 8.9
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.9
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 33.5 bits (73), Expect = 0.24
Identities = 20/71 (28%), Positives = 23/71 (32%)
Frame = -1
Query: 806 GSKARPXKPTPGGPXXRXTTAETXRRPXRXXXPGRXXXKNHXGXCPPXLPPXPXFXGRPX 627
G + P P P P R P P +N PP PP P G+
Sbjct: 707 GVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRN-----PPAPPPPPLMTGKKA 761
Query: 626 TGPXPSHPHAP 594
P P P AP
Sbjct: 762 PAPPPPPPQAP 772
Score = 31.9 bits (69), Expect = 0.72
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Frame = -3
Query: 879 PRPPXRXXPXXXREG-ARPLXPXXXGXXGAARXAXPRGXXXQXHHGGNXAPAXPXXXPGA 703
P PP P G + P P AA P G APA P P A
Sbjct: 712 PPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPPQA 771
Query: 702 PXPEKPXGTMP 670
P KP GT+P
Sbjct: 772 P---KPPGTVP 779
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.55
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 325 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 161
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.1 bits (67), Expect = 1.3
Identities = 32/92 (34%), Positives = 33/92 (35%)
Frame = -3
Query: 906 PXHGXXRGXPRPPXRXXPXXXREGARPLXPXXXGXXGAARXAXPRGXXXQXHHGGNXAPA 727
P G G P PP P R G P P G A PRG HGG P
Sbjct: 1152 PPVGGLGGPPAPPP---PAGFRGGTPP--PNAHGGV-APPPPPPRG------HGGVGGPP 1199
Query: 726 XPXXXPGAPXPEKPXGTMPTGASTXXXVXGXP 631
P PGAP P P G +P G G P
Sbjct: 1200 TP---PGAPAPPMPPG-VPGGPPPPPGGRGLP 1227
>07_01_0469 - 3552409-3553368
Length = 319
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/74 (24%), Positives = 24/74 (32%)
Frame = -1
Query: 833 RDXLXRXXXGSKARPXKPTPGGPXXRXTTAETXRRPXRXXXPGRXXXKNHXGXCPPXLPP 654
+D + R + P PGG R T ++ P R R + PP P
Sbjct: 163 KDEIARLKRENAQLKGLPAPGGVRIRTTPRKSTTAPVRIQLAPRNPPPSAAPAAPPVPPA 222
Query: 653 XPXFXGRPXTGPXP 612
P P P P
Sbjct: 223 APAVPAAPALAPVP 236
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 223 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 339
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_01_0059 - 394001-394708
Length = 235
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -1
Query: 671 PPXLPPXPXFXGRPXTGPXPSHPHAP 594
PP PP P RP P PSHP AP
Sbjct: 30 PPIRPPPPPTP-RPYAPPPPSHPLAP 54
>03_02_0283 -
7078754-7078856,7079358-7079431,7079995-7080090,
7080145-7080270,7080856-7080939,7081458-7081506,
7081630-7081688,7081908-7081925,7082141-7082620
Length = 362
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/69 (28%), Positives = 23/69 (33%)
Frame = -1
Query: 803 SKARPXKPTPGGPXXRXTTAETXRRPXRXXXPGRXXXKNHXGXCPPXLPPXPXFXGRPXT 624
S P +P P A + + R P PP P F GRP
Sbjct: 2 SSPPPQRPPATSPPAPAAAAASPQPLPRAFLAAAASSPRRAAASPAPAPPPPPFTGRP-L 60
Query: 623 GPXPSHPHA 597
P PSH HA
Sbjct: 61 NPNPSH-HA 68
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 674 CPPXLPPXPXFXGRPXTGPXPSHPHAPD 591
CPP PP P P P P PH PD
Sbjct: 115 CPPRPPPPP--PPHPPEDPPPHPPHPPD 140
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 238 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 149
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.5 bits (63), Expect = 3.9
Identities = 25/97 (25%), Positives = 26/97 (26%), Gaps = 1/97 (1%)
Frame = -3
Query: 906 PXHGXXRGXPRPPXRXXPXXXREGARPLXPXXXGXXGAARXAXPRGXXXQXHHGGNXAPA 727
P H G PP P GA P AA P G+ P
Sbjct: 292 PSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPP 351
Query: 726 XPXX-XPGAPXPEKPXGTMPTGASTXXXVXGXPPHXA 619
P P AP P P P G PP A
Sbjct: 352 PPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPA 388
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = -3
Query: 735 APAXPXXXPGAPXPEKPXGTMPTGASTXXXVXGXPPHXAXSVTSP 601
+P P +P P P G MP+ + V PP +SP
Sbjct: 683 SPPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTPESEASSP 727
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 110 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 265
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>02_01_0292 +
1949926-1950037,1950121-1950250,1950551-1950616,
1950718-1950789,1951198-1951607,1951789-1951994,
1952121-1952407,1952527-1952665,1952746-1953141
Length = 605
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 678 TMPTGASTXXXVXGXPPHXAXSVTSPRS 595
TMP + T + G PP A +V +PRS
Sbjct: 137 TMPGSSPTPDTIPGSPPTPAAAVAAPRS 164
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 352 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 185
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,359,596
Number of Sequences: 37544
Number of extensions: 504685
Number of successful extensions: 1679
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1663
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -