Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_K18
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.017
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.28
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 22 1.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 22 5.4
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.017
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +3
Query: 708 KKXXPXXPPPPPXXXXKGX---GGGGXXKKXPPPPPP 809
KK P PPPPP +G G G PPPPPP
Sbjct: 308 KKRPP--PPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 34.3 bits (75), Expect = 0.023
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 709 KKXXPXXPPPPPXXXKKGG---GGGGXXKXXPPPPPP 810
KK P PPPPP +G G G PPPPPP
Sbjct: 308 KKRPP--PPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 29.9 bits (64), Expect = 0.49
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = +1
Query: 631 PPPPXKKKKKXXXXXXXGGXPXXKXKKKXXPXXPPPPPXXXKKGGG--GGGXXKXXPPPP 804
PPPP ++ + G P PPPPP G + PPPP
Sbjct: 313 PPPPPSRRNR--------GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Query: 805 PP 810
PP
Sbjct: 365 PP 366
Score = 29.5 bits (63), Expect = 0.65
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 729 PPPPPXXXXKGXGGGGXXKKXPPPPPP 809
PP PP KK PPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPP 316
Score = 29.1 bits (62), Expect = 0.86
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 729 PPPPPXXXXKGXGGGGXXKKXPPPPPP 809
P PPP K+ PPPPPP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPP 317
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 730 PPPPPXXXKKGGGGGGXXKXXPPPPPP 810
PP PP + K PPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPP 316
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 730 PPPPPXXXKKGGGGGGXXKXXPPPPPP 810
P PPP K PPPPPP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPP 317
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.28
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +1
Query: 721 PXXPPPPPXXXKKGGGGGGXXKXXPPPPPPXV 816
P PPPPP G G PPPPPP V
Sbjct: 761 PPPPPPPP-------GVAGAGPPPPPPPPPAV 785
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 720 PXXPPPPPXXXXKGXGGGGXXKKXPPPP 803
P PPPPP G G G PPPP
Sbjct: 761 PPPPPPPP-----GVAGAGPPPPPPPPP 783
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 22.2 bits (45), Expect(3) = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 793 PPPPPPXV 816
PPPPPP V
Sbjct: 948 PPPPPPLV 955
Score = 21.4 bits (43), Expect(3) = 1.3
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 775 GXXKXXPPPPPP 810
G PPPPPP
Sbjct: 939 GVMPAFPPPPPP 950
Score = 21.0 bits (42), Expect(3) = 1.3
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 721 PXXPPPPPXXXK 756
P PPPPP K
Sbjct: 905 PTPPPPPPLPVK 916
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 720 PXXPPPPPXXXXKGXGGGGXXKKXPPPPPP 809
P PPPPP G + PPPPPP
Sbjct: 6 PGNPPPPPPPP-----GFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 721 PXXPPPPPXXXKKGGGGGGXXKXXPPPPPP 810
P PPPPP G PPPPPP
Sbjct: 6 PGNPPPPPPPP-----GFEPPSQPPPPPPP 30
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 22.2 bits (45), Expect(2) = 5.4
Identities = 11/30 (36%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Frame = +1
Query: 730 PPP---PPXXXKKGGGGGGXXKXXPPPPPP 810
PPP PP PPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 22.2 bits (45), Expect(2) = 5.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 793 PPPPPPXV 816
PPPPPP V
Sbjct: 192 PPPPPPAV 199
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 806 GGGGGXFFXXPPPPPPFXXXXGGGGGXXG 720
GGG G F PPP GG GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,008
Number of Sequences: 5004
Number of extensions: 33309
Number of successful extensions: 246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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