Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_K14
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    30   0.38 
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    29   0.67 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   1.2  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    27   2.7  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    27   3.6  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    26   6.2  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.2  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.2  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    26   6.2  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    26   8.2  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   8.2  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   8.2  

>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
 Frame = +3

Query: 114 DEEVDGSFAGDEEVEE-------GEGQNDNSGDSDEAPPKEDED 224
           +EE D    GDEE EE       GEG  D  G++D    +E+E+
Sbjct: 187 EEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEE 230



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 114 DEEVDGSFAGDEEVE-EGEGQNDNSGDSDEAPPKEDEDYSPED 239
           DEE +    GD + E +G+G+ +N G   E   +E+ D   E+
Sbjct: 197 DEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEEIDIEEEE 239



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 114 DEEVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKEDEDYSPED 239
           +EE DG   G+ +  +GEG+ND  G  +E   + D +   E+
Sbjct: 201 EEEDDGDGDGEGD-GDGEGENDGKGSEEEEEEEIDIEEEEEE 241



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 144 DEEVEEGEGQNDNSGDSDEAPPKEDE 221
           +EE +E E + D  G+ DE   +ED+
Sbjct: 180 EEEADEMEEEFDEEGEGDEEEEEEDD 205


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 114 DEEVDGSFAGDEEVEEGEGQNDNSGDSDEA 203
           D+E   SF  +EE++E E +N +S D D A
Sbjct: 146 DDEFPSSFPSEEELQEPEQENIDSDDEDLA 175


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 111 SDEEVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKEDEDYSPED 239
           ++E+ +GS     + E     +  SGDSD +   E E  S ++
Sbjct: 194 TEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDE 236


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 114 DEEVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKEDEDYSPED 239
           DEE+    A   E EEGE  +++   + E  P + ED   E+
Sbjct: 52  DEEIPSLTAELSEEEEGEYSSESGRSTPELSPDDFEDADDEE 93


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 108 ASDEEVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKEDEDYS 230
           +S +E D S +  E   E    + +S DS+     ED D S
Sbjct: 107 SSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSS 147


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 108 ASDEEVDGSFAGDEEV-EEGEGQNDNSGDSDEAPPKEDEDYSPE 236
           +S+EE +     D EV +E E ++++  +S+E    E+E    E
Sbjct: 87  SSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESE 130


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 111 SDEEVDGSFAGDEEVEEGEGQNDNSGDSDEA 203
           S+EEVDG   G E   E E +  N  D +++
Sbjct: 225 SEEEVDGHSEGKELAGESEEEGSNVDDVEDS 255


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 120 EVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKEDEDY 227
           +++  F+G  E +  +G  DN   S  +P + D+D+
Sbjct: 281 DLESDFSGPGEYDVDDGFIDNRATSQLSPVESDDDF 316


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 114 DEEVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKEDEDY 227
           D+E+     G+E  ++ E  + N   S+  P KE+E Y
Sbjct: 8   DDELFKDLYGEENEKKVESASGNQETSNVTPTKENEGY 45


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 111 SDEEVDGSFAGDEEVEEGEGQNDNSG----DSDEAPPKE 215
           ++E++  + +GDEE EE     DNS     + D AP K+
Sbjct: 142 TEEDLVETVSGDEESEEESESEDNSASEEDELDSAPAKK 180


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 111 SDEEVDGSFAGDEEVEEGEGQNDNSGDSDEAPP 209
           SD+E+  S +GDE VE G+  +  S  SDEA P
Sbjct: 497 SDQELLLS-SGDERVERGKIGSIKSVKSDEATP 528


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 441 NTPSTTTASDSGSGMPTVEEVCSSFGLTD 527
           N P TT   +   G   +E  CS FGL D
Sbjct: 33  NFPFTTIEPNRAIGYAQIECACSRFGLQD 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,696
Number of Sequences: 5004
Number of extensions: 49972
Number of successful extensions: 200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)