Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_K07
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 232 4e-62
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 229 3e-61
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 38 0.003
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.2
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 29 1.2
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.6
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 8.2
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 232 bits (568), Expect = 4e-62
Identities = 117/211 (55%), Positives = 147/211 (69%), Gaps = 3/211 (1%)
Frame = +1
Query: 82 VLALNEEDVAKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 261
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 262 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 441
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 442 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIHATPSLPTLLV*CGGCWHVKC*XFV 621
P D Q I EAS+VNIPVIALC+TDS L VD+AI + G W++ +
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSI---GLAWYLLAREVL 186
Query: 622 VC---FPRDQRWDVVVDLFFYRXPEKSEKXE 705
R W+V+ DL+FYR PE+ E+ E
Sbjct: 187 RLRGNISRTTAWEVMPDLYFYRDPEEIEREE 217
Score = 40.7 bits (91), Expect = 3e-04
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +3
Query: 546 PCNTKSSHSIGLMWWLLAREVLXLRGVLS 632
P N K SIGL W+LLAREVL LRG +S
Sbjct: 165 PINNKGYKSIGLAWYLLAREVLRLRGNIS 193
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 229 bits (561), Expect = 3e-61
Identities = 114/215 (53%), Positives = 148/215 (68%), Gaps = 3/215 (1%)
Frame = +1
Query: 70 GGLDVLALNEEDVAKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 249
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 250 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 429
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 430 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIHATPSLPTLLV*CGGCWHVKC 609
+V DP D Q I EAS+VNIPVIALC+TDS L VDIAI + G W++
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSI---GLIWYLLA 181
Query: 610 *XFVVC---FPRDQRWDVVVDLFFYRXPEKSEKXE 705
+ R WDV+ DL+FYR PE+ E+ E
Sbjct: 182 REVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREE 216
Score = 42.7 bits (96), Expect = 7e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +3
Query: 546 PCNTKSSHSIGLMWWLLAREVLXLRGVLS 632
P N K SIGL+W+LLAREVL +RG LS
Sbjct: 164 PTNNKGRKSIGLIWYLLAREVLRVRGTLS 192
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 37.5 bits (83), Expect = 0.003
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 27/173 (15%)
Frame = +1
Query: 115 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 288
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 289 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 405
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 406 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIHA 552
++ P L+++L+P ++ EA ++P I + +TD+ R V I A
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPA 224
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 205 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 381
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 675 VEEQINHNIPALVTGKAH--HEASTLHVPTTTTSNQ*SGKTWCCMDS 541
++ +HN+ +TG + ++S L + TT + SGK+ C+D+
Sbjct: 161 IKNSYSHNLGEPITGLTYLDDQSSVLFIATTNKTYSLSGKSLSCLDN 207
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.6
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -3
Query: 468 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 289
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 288 EHISGVLDG 262
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -2
Query: 676 GRRTNQPQHPSAGHGESTPRSXNTSRANNHHIKPIE 569
G+ NQP P + +S P S + H +P++
Sbjct: 356 GQNNNQPAQPGQYNQQSQPVQSYQSGQSTQHFQPVQ 391
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,585,972
Number of Sequences: 5004
Number of extensions: 74712
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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