Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_K07
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   237   8e-63
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   234   8e-62
09_06_0103 + 20873310-20873382,20873530-20873735                       29   6.5  
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    28   8.6  
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561...    28   8.6  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  237 bits (580), Expect = 8e-63
 Identities = 120/222 (54%), Positives = 151/222 (68%), Gaps = 4/222 (1%)
 Frame = +1

Query: 52  ISATMSGGLDVLALNEEDVAKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 231
           ++A   G    L+  E+DV  MLAA  HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1   MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60

Query: 232 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 411
           KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F
Sbjct: 61  KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120

Query: 412 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIHATPSLPTLLV*CGG 591
            EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI I A       +    G
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSI----G 176

Query: 592 CWHVKC*XFVV----CFPRDQRWDVVVDLFFYRXPEKSEKXE 705
           C        V+          +WDV+VDLFFYR PE++++ E
Sbjct: 177 CLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQE 218



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 546 PCNTKSSHSIGLMWWLLAREVLXLRGVLSP 635
           P N K  +SIG ++WLLAR VL +RG + P
Sbjct: 166 PANNKGRNSIGCLFWLLARMVLQMRGTILP 195


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  234 bits (572), Expect = 8e-62
 Identities = 117/211 (55%), Positives = 146/211 (69%), Gaps = 4/211 (1%)
 Frame = +1

Query: 85  LALNEEDVAKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 264
           L+  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71

Query: 265 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 444
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131

Query: 445 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIHATPSLPTLLV*CGGCWHVKC*XFVV 624
             DHQPI E++  NIP IA C+TDSP+R+VDI I A       +    GC        V+
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSI----GCLFWLLARMVL 187

Query: 625 ----CFPRDQRWDVVVDLFFYRXPEKSEKXE 705
                     +WDV+VDLFFYR PE++++ E
Sbjct: 188 QMRGTILPGHKWDVMVDLFFYRDPEEAKEQE 218



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +3

Query: 546 PCNTKSSHSIGLMWWLLAREVLXLRGVLSP 635
           P N K   SIG ++WLLAR VL +RG + P
Sbjct: 166 PANNKGKQSIGCLFWLLARMVLQMRGTILP 195


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 330 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 437
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 334 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 179
           + SV + D+  ++  RT  RGS  L    QPE + PRY+       H   VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319


>01_06_0902 +
           32853708-32853739,32854787-32855596,32856094-32856157,
           32856375-32856446
          Length = 325

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 159 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 266
           P   +C+ T C    C        K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,881,434
Number of Sequences: 37544
Number of extensions: 579087
Number of successful extensions: 1334
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)