Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_K02
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.53
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 31 1.2
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.8
07_03_1136 + 24218601-24218734,24218769-24219906 29 5.0
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 29 5.0
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 5.0
08_02_0276 + 15220151-15220465,15222587-15222730,15223179-15223367 29 6.6
09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715 28 8.7
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 28 8.7
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.7
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.7
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 340 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 176
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/58 (31%), Positives = 22/58 (37%)
Frame = -3
Query: 821 RAASPPXXXRXTGAPXADTXPRPPXXXXPGXPXPXXTXXGXXXPGAXXXRHGSGLXTP 648
+ A+PP + +P A PP P P P T P A SGL TP
Sbjct: 21 QTAAPPPASNNSSSPPAPGSLSPPSLTPPAAPSPPSTTPS--SPAAAAAASSSGLTTP 76
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 238 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 354
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 253 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 164
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = +2
Query: 650 GCXAPTRGGGXXPXVXXXPXXXXPGXAAPXXXXWGGGGPCPXRXXPXXGXXXGGLRP 820
G P GGG P P G A P GGGG P R G RP
Sbjct: 105 GARPPGGGGGGGPP-SLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARP 160
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = -3
Query: 824 WRAASPPXXXRXTGAPXADTXPRPPXXXXPGXPXPXXTXXG 702
W A PP R P P PP P P P + G
Sbjct: 35 WSAPPPPARHRAPSPPRPPPPPPPPTQPAPPPPPPARSGGG 75
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Frame = -2
Query: 810 PPXLXPXHGXXRXGHGPPPPXXXXXGA---AXPGXXXXGXXXTXGXXPPP 670
PP L P H GH PPPP GA A G PPP
Sbjct: 287 PPPLPPSH-HHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPP 335
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/56 (28%), Positives = 17/56 (30%)
Frame = -3
Query: 815 ASPPXXXRXTGAPXADTXPRPPXXXXPGXPXPXXTXXGXXXPGAXXXRHGSGLXTP 648
A PP + A P PP P P P G P R G G P
Sbjct: 332 APPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPP 387
>08_02_0276 + 15220151-15220465,15222587-15222730,15223179-15223367
Length = 215
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +2
Query: 275 MNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSG 445
M + RL + +G +T R WR D V + AAA A A A S G+G
Sbjct: 1 MEGVGARLGRTSARYGTTTTFTGPVRKWRKDWVPV-AAAAAAAAAAASAASSTAGAG 56
>09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715
Length = 462
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +1
Query: 217 ETC*HS*VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTLVEA*RGTAKRGCXH 396
E C + V V + D RS L T++ ++ G H A L T +E G R C H
Sbjct: 57 EKCKNVEVNVQQEDQQRSIPLLLYLTSQSDKNGSTPLHFAASLKTSIE---GFTSRLCEH 113
Query: 397 RRGLRSP 417
R +SP
Sbjct: 114 FRPKQSP 120
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = -2
Query: 786 GXXRXGHGPPPPXXXXXGAAXPGXXXXGXXXTXGXXPPPRVGAXHPH 646
G + GPPPP PG G G PP + G P+
Sbjct: 305 GGNQEYRGPPPPPPSAYQGNNPGYQGGGPGYHGGNPPPYQAGNPPPY 351
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 125 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 280
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 367 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 200
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,355,520
Number of Sequences: 37544
Number of extensions: 493742
Number of successful extensions: 1424
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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