Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_J23
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   1.5  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   2.5  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    27   2.5  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.5  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    26   5.9  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    26   5.9  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   7.8  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 340 RPQNRRSARTSLSDNAFPRFLLVITPP 420
           RPQ +RS+   LS +AF +F+   +PP
Sbjct: 139 RPQAKRSSSRLLSTDAFSQFISSFSPP 165


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 302 DFF-CRECSKEQKLALKIGEVPEHLCQTMLSLGFSW 406
           DFF  RE   +++L L    VP HL Q+ L    SW
Sbjct: 834 DFFGLRELGLDRELGLDSLSVPLHLLQSRLRSNMSW 869


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 385 HCLTKMFGH--FSYFEGELLFLGTFTAKEIKKRAL 287
           + L    GH   S+  GE  F GT+ A+E K RAL
Sbjct: 319 YMLAASLGHDRSSFLVGEAFFYGTYGARENKLRAL 353


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 516 NWISDDLFMEEIVPLVVSXASXIPSLVNAFSSSKPPQTDNRL 641
           N IS D+F   + PL     S + SLV  FS+   P  DN+L
Sbjct: 33  NLISSDVFSSALKPL-----SPLKSLVADFSTHSNPSKDNQL 69


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 531 DLFMEEIVPLVVSXASXIPSLVNAFSSSKPPQTDNRL 641
           D+F  + +P++ + A  IPSL  A   SK P T+  +
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTEKHV 275


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 329 PWNIHGKRNQKARSGKSLDLLARESRKRRRE 237
           PW +  K   K R GK+++ L    R R +E
Sbjct: 286 PWGVLAKGGYKTRRGKNVNKLLVRDRPRGKE 316


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 260 LLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPEHLCQTMLSLGF 400
           L  +D VIY    F F C +       +LK+ +  E+ C+ +L   F
Sbjct: 76  LTKSDAVIYLEDQFHFHCYDYYYTPIPSLKLKDSEENTCEMILHSSF 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,669
Number of Sequences: 5004
Number of extensions: 63435
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)