Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_J14
(920 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 50 4e-08
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 48 2e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 48 2e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 47 2e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 44 1e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 44 3e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 43 3e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 42 6e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 42 8e-06
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 42 1e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 35 0.001
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 34 0.002
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 24 1.7
DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse tr... 24 1.7
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 5.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 5.2
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 49.6 bits (113), Expect = 4e-08
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Frame = +1
Query: 73 IASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRESEST 231
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 232 VRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 369
+ L+ W D + W+ E+G T L V SE +W PD+VL N A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNA 113
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 48.0 bits (109), Expect = 1e-07
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +1
Query: 91 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 255
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 256 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 357
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.6 bits (108), Expect = 2e-07
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 208 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 381
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 382 GDYALRXRVSXNGSXSWI 435
G Y V+ NGS ++
Sbjct: 153 GTYQTNVVVTHNGSCLYV 170
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.6 bits (108), Expect = 2e-07
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 208 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 381
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 382 GDYALRXRVSXNGSXSWI 435
G Y V+ NGS ++
Sbjct: 153 GTYQTNVVVTHNGSCLYV 170
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 47.2 bits (107), Expect = 2e-07
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 208 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 381
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 382 GDYALRXRVSXNGSXSWI 435
G Y V+ NGS ++
Sbjct: 85 GTYQTSVVVTHNGSCLYV 102
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 45.2 bits (102), Expect = 8e-07
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 208 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 381
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 382 GDYALRXRVSXNGSXSWI 435
G Y V+ +GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 45.2 bits (102), Expect = 8e-07
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 208 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 381
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 382 GDYALRXRVSXNGSXSWI 435
G Y V+ +GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 45.2 bits (102), Expect = 8e-07
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 208 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 381
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 382 GDYALRXRVSXNGSXSWI 435
G Y V+ +GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 45.2 bits (102), Expect = 8e-07
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 208 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 381
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 382 GDYALRXRVSXNGSXSWI 435
G Y V+ +GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 45.2 bits (102), Expect = 8e-07
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 208 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-AXTA 381
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 382 GDYALRXRVSXNGSXSWI 435
G Y V+ +GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 45.2 bits (102), Expect = 8e-07
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Frame = +1
Query: 64 TCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRES 222
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 223 ESTVRIQADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 369
T + ++ W D +L WN ++G T V SE +W PD+VL N A
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 44.4 bits (100), Expect = 1e-06
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +1
Query: 97 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 264
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 265 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 363
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 43.6 bits (98), Expect = 3e-06
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +1
Query: 91 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 249
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 250 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 369
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 43.2 bits (97), Expect = 3e-06
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +1
Query: 169 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 342
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 343 PDVVLLNAAAXTAGDYALRXR----VSXNGSXSWI 435
PD+VL N A G+Y +R + + NG W+
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWV 142
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 42.3 bits (95), Expect = 6e-06
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +1
Query: 118 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQADLQMNWIDKR 276
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 277 LSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 369
L WN E+G L V SE +W PD+VL N A
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 41.9 bits (94), Expect = 8e-06
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Frame = +1
Query: 70 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 234
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 235 RIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-AXTAGDYALRXRV 408
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130
Query: 409 SXNGSXSWI 435
NG+ ++
Sbjct: 131 KNNGTCLYV 139
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Frame = +1
Query: 172 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 348
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 349 VVLLNAAAXTAGDYALRXR--VSXNGSXSWI 435
+L N A + VS G W+
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWL 122
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 40.7 bits (91), Expect = 2e-05
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +1
Query: 118 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 282
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 283 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 369
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 40.7 bits (91), Expect = 2e-05
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +1
Query: 118 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 282
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 283 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 369
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 37.1 bits (82), Expect = 2e-04
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Frame = +1
Query: 94 ENATSLSLMIDSLLATYDRDSPPDS--KIVVNLTLHL--RHANIRESESTVRIQADLQMN 261
++ T+L + L YD + P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 262 WIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAAXT 378
W D LSW ++ G + V S+ +W PD+ + N+ T
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMT 138
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 34.7 bits (76), Expect = 0.001
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Frame = +1
Query: 118 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 276
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 277 LSWN--AGEWGCSTWLVSSERLWRPDVVLLN 363
L +N G T L + R+W PD+ N
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVWMPDLFFSN 124
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 34.3 bits (75), Expect = 0.002
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +1
Query: 106 SLSLMIDSLLATYDRDSPPD----SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNWID 270
++++++++LL Y+ + P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 271 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 363
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 24.2 bits (50), Expect = 1.7
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -1
Query: 47 KNNISRRHFMTFFS 6
K+NI R++F+TFFS
Sbjct: 114 KDNILRQYFITFFS 127
>DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse
transcriptase protein.
Length = 110
Score = 24.2 bits (50), Expect = 1.7
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -1
Query: 47 KNNISRRHFMTFFS 6
K+NI R++F+TFFS
Sbjct: 97 KDNILRQYFITFFS 110
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.6 bits (46), Expect = 5.2
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +1
Query: 172 IVVNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLS-----WNAGEWGCSTWLVSSER 333
++V+ + + N I + R+ ++ +WI+ RL + G+ + +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 334 LWRPDVVLLNA 366
LW+PD LNA
Sbjct: 71 LWQPDPYFLNA 81
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 5.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 315 PSAAAPLPCVPTQS 274
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,189
Number of Sequences: 438
Number of extensions: 4225
Number of successful extensions: 59
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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