Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_J10
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 204 1e-53
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 203 3e-53
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 2.6
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 6.1
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 26 8.0
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 26 8.0
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 204 bits (498), Expect = 1e-53
Identities = 119/254 (46%), Positives = 142/254 (55%), Gaps = 4/254 (1%)
Frame = +3
Query: 93 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 272
S+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESW
Sbjct: 9 SIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67
Query: 273 GTGRAVARIPRVRGGGTHRSGQSAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 452
GTGRA+ARIPRV GGGTHRSGQ+AFGNMCR GRMFAPTK WR+WH
Sbjct: 68 GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSA 127
Query: 453 XXXXXXXXXXQARGHIIEKIPELPLGCSRQSPGDQQDQTGCHLPEAPQGMV*YP*GVQVS 632
ARGH IE+IPE+PL Q+ + L + + Y V+V+
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKA---YRDVVKVA 184
Query: 633 AS---SCW*G*NAQPSSYPA*GAPHNLQQGSGSDSRLRNIPGWS-S*MXQAEPTELAPGG 800
S G G + +G RNIPG + + +LAPGG
Sbjct: 185 NSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGG 244
Query: 801 HFGRFVIWTXSXFG 842
H GRFVIWT S FG
Sbjct: 245 HLGRFVIWTKSAFG 258
Score = 99.1 bits (236), Expect = 7e-22
Identities = 46/95 (48%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Frame = +1
Query: 502 LKRFPNFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 681
++ P P VV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQ 203
Query: 682 RKGPLIIFNKDQGLTRAFGTSRG-GAPECXKLNLL 783
R+GPL++FN+D G+ +AF G +LNLL
Sbjct: 204 RRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLL 238
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 203 bits (495), Expect = 3e-53
Identities = 117/254 (46%), Positives = 142/254 (55%), Gaps = 4/254 (1%)
Frame = +3
Query: 93 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 272
S+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESW
Sbjct: 9 SIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67
Query: 273 GTGRAVARIPRVRGGGTHRSGQSAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 452
GTGRA+ARIPRV GGGTHRSGQ+AFGNMCR GRMFAPTK WR+WH
Sbjct: 68 GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASA 127
Query: 453 XXXXXXXXXXQARGHIIEKIPELPLGCSRQSPGDQQDQTGCHLPEAPQGMV*YP*GVQVS 632
ARGH IE+IPE+PL Q+ + L + + Y ++V+
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKA---YRDVIKVA 184
Query: 633 AS---SCW*G*NAQPSSYPA*GAPHNLQQGSGSDSRLRNIPGWS-S*MXQAEPTELAPGG 800
S G G + +G RNIPG + + +LAPGG
Sbjct: 185 NSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGG 244
Query: 801 HFGRFVIWTXSXFG 842
H GRFVIWT S FG
Sbjct: 245 HLGRFVIWTKSAFG 258
Score = 99.5 bits (237), Expect = 5e-22
Identities = 46/95 (48%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Frame = +1
Query: 502 LKRFPNFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 681
++ P P VV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQ 203
Query: 682 RKGPLIIFNKDQGLTRAFGTSRG-GAPECXKLNLL 783
R+GPL++FN+D G+ +AF G +LNLL
Sbjct: 204 RRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLL 238
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 768 QAEPTELAPGGHFGRFVIWTXS 833
+ +PT LAPG HFG+ + + S
Sbjct: 660 RVDPTALAPGHHFGKVLAYDAS 681
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 143 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 238
PV VQG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 572 ACLVLLISWTLSATTQGKFGNLF 504
A LV L T+ A GKFGNLF
Sbjct: 63 AVLVDLEPGTMDAVKSGKFGNLF 85
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.8 bits (54), Expect = 8.0
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +3
Query: 495 HIIEKIPELPLGCSRQSPGDQQDQTGCH 578
H++EK+ E+ + C R ++ CH
Sbjct: 264 HLLEKLTEVNVMCDRHMDAISSEELACH 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,421,680
Number of Sequences: 5004
Number of extensions: 67226
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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