Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_J01
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.054
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 30 0.38
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.67
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 1.5
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 2.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.6
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 27 4.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 8.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 8.2
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.054
Identities = 17/67 (25%), Positives = 19/67 (28%)
Frame = -1
Query: 878 PXPRXPPRXAXPXXXGXAXXXPGXAPPRGRPXXPXRPXPPXRXPAPXXRXXPXXPXXXXR 699
P P PP P P PP+ P P PA P P +
Sbjct: 961 PRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSK 1020
Query: 698 XPPAAXP 678
PP P
Sbjct: 1021 APPVPLP 1027
Score = 29.5 bits (63), Expect = 0.67
Identities = 20/67 (29%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Frame = -3
Query: 873 PXRPPPARXXAXAXXRRXXXGPRPXARPAXPXPXXXXPXAXXXXXXPPXAXXXXXXPP-P 697
P PPP A P P P P P P PP PP P
Sbjct: 1060 PSAPPPV----PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVP 1115
Query: 696 APRGXXP 676
AP G P
Sbjct: 1116 APSGAPP 1122
Score = 29.5 bits (63), Expect = 0.67
Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Frame = -1
Query: 884 PPPXPRXPPRXAXPXXXGXAXXXPGXAPPRGRP--XXPXRPXPPXRXPAPXXR-XXPXXP 714
P P P P P P APP +P P P P P P P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 713 XXXXRXPPAAXP 678
PP P
Sbjct: 1173 APSSGIPPVPKP 1184
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/71 (25%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Frame = -1
Query: 884 PPPXPRXPPRXAXPXXXGXAXXXPGXAPPRGRPXX--PXRPXPPXRXPAPXXRXXPXXPX 711
P P P + P + P PP P P P P P P P P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK 1096
Query: 710 XXXRXPPAAXP 678
PP P
Sbjct: 1097 PSVAAPPVPKP 1107
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 218 VRVHRANTGRSSNELDRQTTELERR 292
+R H+ + GR+ ELDR+ T+L++R
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQR 42
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.67
Identities = 23/69 (33%), Positives = 26/69 (37%)
Frame = -1
Query: 884 PPPXPRXPPRXAXPXXXGXAXXXPGXAPPRGRPXXPXRPXPPXRXPAPXXRXXPXXPXXX 705
PPP P PPR A P PP+GR P P PP P+ + P
Sbjct: 337 PPPPP--PPRS------NAAGSIP--LPPQGRSAPP--PPPPRSAPSTGRQPPPLSSSRA 384
Query: 704 XRXPPAAXP 678
PPA P
Sbjct: 385 VSNPPAPPP 393
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Frame = -1
Query: 884 PPPXPRXPPRXAXPXXXG--XAXXXPGXAPPRGRPXXPXRPXPPXRXPAPXXRXXPXXPX 711
PPP P R P G + P PPR P PP AP P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSI-PLPPQGRSAPPPPPPRSAPS 371
Query: 710 XXXRXPP 690
+ PP
Sbjct: 372 TGRQPPP 378
Score = 26.2 bits (55), Expect = 6.2
Identities = 22/68 (32%), Positives = 23/68 (33%)
Frame = -1
Query: 881 PPXPRXPPRXAXPXXXGXAXXXPGXAPPRGRPXXPXRPXPPXRXPAPXXRXXPXXPXXXX 702
PP P PP A P A G A R P P PP P+ P P
Sbjct: 388 PPAP--PP--AIPGRSAPALPPLGNA---SRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
Query: 701 RXPPAAXP 678
PAA P
Sbjct: 441 MGAPAAPP 448
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Frame = +3
Query: 759 GGXGXXGXGGPAARXG------XARXXXGGAXRXRXGXPGGXAXAGGG 884
GG G G G AR G R GGA R G GG A GG
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = +1
Query: 715 GXXGXXRXXGAGXRXG--GXGRXGXXGRPRGGAXPGXXXAXPXXXGXAXRGGXRG 873
G G R G R G G R G G RGG G RGG RG
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = -2
Query: 880 PPAXAXPP-GXPXRXRXAPPXXXRAXPXRAAGPPXPXXPXPP 758
P + PP P R PP A P + PP P PP
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Frame = -1
Query: 881 PPXPRXPPRX--AXPXXXGXAXXXPGXAPPRGRPXXPXR-PXPPXRXPAPXXRXXPXXPX 711
PP P PP + P A P PP +P P + P P+ P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Query: 710 XXXRXPPAA 684
P A
Sbjct: 204 PPLSQAPVA 212
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/78 (25%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Frame = -1
Query: 884 PPPXPRXPPRXAXPXXXGXAXXXPGXAPPRGRPXXPX-RPXPPXRXPAPXXRXXPXXPXX 708
P P P + P P APP P PP PA + P P
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSL 190
Query: 707 XXRXPPAAXPPXXXXXXP 654
P+A PP P
Sbjct: 191 -----PSAVPPMPPKVPP 203
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +1
Query: 679 GXAAGGXRXXXXGXXGXXRXXGAGXRXGGXGRXGXXGRPRGGAXPG 816
G GG G G G G G G G G P G PG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 396 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 533
RA +++ + +KR DI + DNW ND+ C + G +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -1
Query: 833 GXAXXXPGXAPP-RGRPXXPXRPXPPXRXPAPXXRXXPXXPXXXXRXPPAAXPP 675
G A P PP R + P + P P P P PP+A PP
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = -1
Query: 884 PPPXPRXPPRXAXPXXXGXAXXXPGXAPPRGRPXXPXRPXPPXRXP 747
PPP P P+ A P P PP G P P P
Sbjct: 1883 PPPPPMALPK-AGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVP 1927
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Frame = -2
Query: 883 PPPAXAXPPGXPXRXRXAPPXXXRAXP--------XRAAGPPXPXXPXP 761
PPPA P P PP P AGPP P P P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,248
Number of Sequences: 5004
Number of extensions: 56465
Number of successful extensions: 222
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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