Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_I24
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 30 0.37
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.49
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 3.5
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 27 3.5
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 4.6
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 4.6
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 26 6.1
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 26 6.1
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 6.1
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 26 8.1
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 8.1
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 26 8.1
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.3 bits (65), Expect = 0.37
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Frame = -1
Query: 462 TPSIMLSLMLSP*VKRRTLITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPT 283
+PS+ LS + + + T++ S K T A P+N T IT+PT
Sbjct: 320 SPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS---ISFANTTPENTSTQITSPT 376
Query: 282 TMKIHGP-TARWVFSKS--LTMVQFIRNATPIPTSSRPRSAT 166
+ P T+ V + S +T + +TPI +SS S+T
Sbjct: 377 AVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSST 418
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 29.9 bits (64), Expect = 0.49
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +2
Query: 545 ECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNCTVDAANPGCGPK-IGELYQKWTXYX 721
+C G+ YGQ C S++S AG N T+ A C + I +Q + +
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESCSKQDISVEFQFFFWFT 361
Query: 722 RVALGVXV 745
+ G+ +
Sbjct: 362 IIGFGLLI 369
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 443 ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 553
ESI+ + V FK+R+D N E F EL +Q F C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 3.5
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = -1
Query: 408 LITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPTAR---WVFSK 238
L C + K +A +T Q LSR+ H KN + P I P++R V+
Sbjct: 95 LFEWCGRRFSVKTVA-MTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSRNANMVYMV 153
Query: 237 SLTMVQFIRNATP---IPTSSRPR-SATTRLKKNSTY 139
M ++ R+ IP S R S T R +T+
Sbjct: 154 DFGMAKYYRDPKTKQHIPYSERKSLSGTARYMSINTH 190
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -3
Query: 496 VSVGSLFE*HADAIHNALLDALAVGEEEDADHHLHNDD-HQQEDCVRDDHAVTLAYRSTA 320
+SV + E DA+ A + +V +E++ + L DD + +ED + D+ + +
Sbjct: 26 LSVSTKEELGDDAL--AAEEGQSVLDEQEIEEALEEDDTNYEEDIIDDEESAQVDEEELE 83
Query: 319 SQERDHEHYSPDDYEDPRTDSK 254
+E + E +P+ + +S+
Sbjct: 84 EEEEEEEDATPEPVVTSKKNSR 105
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 124 NEFCEICAILLQPGRRAPRPAASGDWSSVPDELDHGQR 237
+E E+ L+P RAPRP+ S S E+ H R
Sbjct: 77 DEKLEVDFAFLEPPERAPRPSISTRSRSQSPEVQHRDR 114
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 457 IHNALL-DALAVGEEEDADHHLHNDDHQQED 368
+H+ +L D LA D D L D+H Q+D
Sbjct: 56 LHDTILPDVLAASYRHDIDTALSTDEHTQKD 86
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 424 GEEEDADHHLHNDDHQQEDCVRDDH 350
G ++ HH H+ DH D DH
Sbjct: 10 GSDDSTHHHTHDYDHHNHDHHGHDH 34
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 274 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLLAGDHH 390
L SRR N + +V WS+ E +H + RNL + H
Sbjct: 12 LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 336 RIAPQHPKNAITNITAPTTMKIHG 265
RI P P N + NIT P+T+ HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -3
Query: 415 EDADHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDY 278
E+ + N + Q+ DDH + SQE HEH D+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDH 550
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 237 SLTMVQFIRNATPIPTSSRPRSATTRLKKNSTYFTKLVPHPML 109
SL + +F + T + +P S T + NS+ FTK P P L
Sbjct: 218 SLIVEKFAQRNT-LSDMDQPASLTAYVDANSSSFTKSKPEPSL 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,092
Number of Sequences: 5004
Number of extensions: 54620
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -