Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_I18
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   0.25 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect(2) = 0.25
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 801 PPPPPPPXXXXXGKK 757
           PPPPPPP     G +
Sbjct: 777 PPPPPPPAVSAGGSR 791



 Score = 24.2 bits (50), Expect(2) = 0.25
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 843 PPXXXKKKKXXXXXPPPPPPP 781
           PP            PPPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 24.2 bits (50), Expect(2) = 1.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 801 PPPPPPPXXXXXG 763
           PPPPPPP     G
Sbjct: 762 PPPPPPPGVAGAG 774



 Score = 22.2 bits (45), Expect(2) = 1.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 828 KKKKXXXXXPPPPPP 784
           +++K     PPPPPP
Sbjct: 723 EQQKLLLKSPPPPPP 737


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 843 PPXXXKKKKXXXXXPPPPPPP 781
           PP    K+      PPPPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPP 244


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 801 PPPPPPPXXXXXGK 760
           PPPPPPP     GK
Sbjct: 311 PPPPPPPSRRNRGK 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,062
Number of Sequences: 5004
Number of extensions: 25878
Number of successful extensions: 189
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)