Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_I16
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 220 2e-58
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 219 3e-58
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.5
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 6.1
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 6.1
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 8.1
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 220 bits (537), Expect = 2e-58
Identities = 98/168 (58%), Positives = 130/168 (77%)
Frame = +1
Query: 178 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 357
GYKAGMTH+VR+ DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWA
Sbjct: 48 GYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWA 107
Query: 358 EHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 537
EH+SE+ +RRFYKNW+ + + +SI ++ +++ +YCSVVRV+AHTQ
Sbjct: 108 EHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQ 165
Query: 538 MKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDE 681
++ QKKAH+MEIQ+NGG++ DKV+WAREH EK + + S F Q+E
Sbjct: 166 IRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNE 213
Score = 77.4 bits (182), Expect = 3e-15
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIG 179
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+G
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLG 48
Score = 32.7 bits (71), Expect = 0.071
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +3
Query: 681 MIDCIXXXXXXXXXXXPSXWHTXKLPR*KXXGLRKXACXGA 803
MID I + W T +LPR GLRK AC GA
Sbjct: 214 MIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGA 254
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 219 bits (536), Expect = 3e-58
Identities = 97/168 (57%), Positives = 130/168 (77%)
Frame = +1
Query: 178 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 357
GYKAGMTH+VR+ DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWA
Sbjct: 48 GYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWA 107
Query: 358 EHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 537
EH+SE+ +RRFYKNW+ + + +SI ++ +++ +YCSVVRV+AHTQ
Sbjct: 108 EHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQ 165
Query: 538 MKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDE 681
++ QKKAH+MEIQ+NGG++ DKV+WAREH EK + + S F Q+E
Sbjct: 166 IRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNE 213
Score = 77.4 bits (182), Expect = 3e-15
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIG 179
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+G
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLG 48
Score = 32.7 bits (71), Expect = 0.071
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +3
Query: 681 MIDCIXXXXXXXXXXXPSXWHTXKLPR*KXXGLRKXACXGA 803
MID I + W T +LPR GLRK AC GA
Sbjct: 214 MIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGA 254
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 39 RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 158
++E QHP +M FY + + G FP++ KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 505 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 615
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 311 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 463
TL DYA+ S +S+ LK V+ T T RRR + RN + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = -2
Query: 722 FVSXALGDTNAVNHSSWXNTESTGIGFSRCSLAHFTLSSMVPPLSW 585
F+ + T ++ SW T + G + AH ++S + P W
Sbjct: 746 FIYFCVVYTGGSSNFSWWGTTVSSAGCDKKGCAHLSVSDISKPSGW 791
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,328,596
Number of Sequences: 5004
Number of extensions: 67623
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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