Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_I08
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    29   0.61 
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.81 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   5.7  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   7.6  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +3

Query: 111 PNVGGPDQVARRLYMGVVRSMALYGAPVWCHALTRENVAAL--RRPQRAIAVRAIRGYRT 284
           PN+GG     R++  GV+  MA  G PV C     + + A+  R       ++ I  +  
Sbjct: 722 PNMGGKSTYIRQV--GVITVMAQIGCPVPCEVADLDIIDAILARVGASDSQLKGISTFMA 779

Query: 285 VSFEAACLLAGAPPWDL 335
              E A +L  A P  L
Sbjct: 780 EMLETATILRAATPRSL 796


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 180  YGAPVWCHALTRENVAALRRPQRAIAVRAIRG 275
            YG    C  LT EN++A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
 Frame = -3

Query: 569 PEGEASXVAAH--PVREDRTDRLDGTEAGR---RVRQAARPRLQHGP--PRVEPPRSNYT 411
           P   AS + ++  PV E      +   +G    R RQ  R R    P  PRV  P   Y 
Sbjct: 211 PASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYN 270

Query: 410 FXGAPFPPRAEVATPPVIGS 351
                +PP    A P   GS
Sbjct: 271 TPPFGYPPTTSSALPNASGS 290


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 446 PPRVEPPRSNYTFXGAPFPPRAEVATPP 363
           PP   PPRSN      P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 114 LEAAGSESRPSPSVEGPTSQSERGSS 37
           L   G  SRP+P V+  TS ++ GSS
Sbjct: 217 LRKPGVNSRPAPPVQDVTSSTKYGSS 242


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 96  ESRPSPSVEGPTSQSERGSS 37
           ES PSPS   P+S S R  S
Sbjct: 59  ESAPSPSTSSPSSASSRSQS 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,826
Number of Sequences: 5004
Number of extensions: 35214
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)