Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_I08
         (835 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    30   2.3  
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC006833-8|AAF60944.1|  360|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   7.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   7.2  
U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   7.2  

>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -3

Query: 503 GTEAGRR----VRQAARPRLQHGPPRVEPPRSNYTFXGAPFPPRAEVATPP 363
           GTE+G R     RQA    + H PP V PP+        P P +  VA PP
Sbjct: 255 GTESGARHGSISRQATLTFVSHKPPPVNPPQPAV----PPKPAKISVADPP 301


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 185 GSRMVPRPDPRERRGAA---TSAARDRGQGDPRIP 280
           G R  P P PR+R GA     +AA D G   PR+P
Sbjct: 121 GFRQPPPPPPRKRTGAQPVYPAAANDPGDELPRLP 155


>AC006833-8|AAF60944.1|  360|Caenorhabditis elegans Hypothetical
           protein ZK616.8 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
 Frame = -3

Query: 398 PFPPRAE-VATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVSSDRPDRDRALRTSQRRD 222
           PF P  +  +TPPV    R RLQ        Q    E D  V    P+  RA + +    
Sbjct: 227 PFSPSKQPTSTPPVSEGNRKRLQTKVVERSNQIES-EMDSFVKKIEPNERRATQYNHSNS 285

Query: 221 VLAGQGVAPYGSXXXXXXXXXXXVEAARHLIG 126
           +       P G+           +   R LIG
Sbjct: 286 LSGSNEAVPPGNVKRSPQKATHPIRTTRSLIG 317


>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +2

Query: 38  ELPRSL*EVGPSTDGDGRLSEPAASKRRGSRSGGAPPLHGG--GAVDGTIRGSRMVPRPD 211
           E PR      P +  +    E   + RRG R   A PL  G        +RG    P   
Sbjct: 254 EKPRKQKPAAPPSSEENEEDEDDGAIRRGQRR--AVPLRRGTTSGPPSRLRGRMSHPMGP 311

Query: 212 PRERRGAATSAARDR 256
           PR   GA  S+A +R
Sbjct: 312 PRRSSGAPPSSASNR 326


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +2

Query: 38  ELPRSL*EVGPSTDGDGRLSEPAASKRRGSRSGGAPPLHGG--GAVDGTIRGSRMVPRPD 211
           E PR      P +  +    E   + RRG R   A PL  G        +RG    P   
Sbjct: 254 EKPRKQKPAAPPSSEENEEDEDDGAIRRGQRR--AVPLRRGTTSGPPSRLRGRMSHPMGP 311

Query: 212 PRERRGAATSAARDR 256
           PR   GA  S+A +R
Sbjct: 312 PRRSSGAPPSSASNR 326


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 159 VVRSMALYGAPVWCHALTRENVAALRRPQRAIAVRAIRG 275
           +++  ALYGAP W   L+  N+  L    R+ A+RA  G
Sbjct: 689 LIKPTALYGAPAWTSLLSDTNLEKLEIAYRS-ALRACVG 726


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
 Frame = +2

Query: 68  PSTDGDGRLSEPAASKRRGSRSGGAPPLHGGGAVDGTIRGSRMVPRPD-PRERRGAATSA 244
           P  DG+    EP  +   G    G PP   GGA      GS   P P  P  + G   +A
Sbjct: 206 PGKDGEKGKGEPGPAGPPGPPGPGGPPGDAGGA------GSDGAPGPQGPPGQDGTPGNA 259

Query: 245 ARDRGQGDPRIP 280
             D   G P  P
Sbjct: 260 GPDGQPGSPGGP 271


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -3

Query: 464 PRLQHGPPRVEPPRSNYTFXGAPFPPRAEVATPPVIGSERLRLQVPGWRP 315
           P +  GPP   PP       G P PP      PP+ G        PG  P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -3

Query: 464 PRLQHGPPRVEPPRSNYTFXGAPFPPRAEVATPPVIGSERLRLQVPGWRP 315
           P +  GPP   PP       G P PP      PP+ G        PG  P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769


>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 65  GPSTDGDGRLSEPAASKRRGSRSGGAPPLHGGGAVDGTIRGSR 193
           G  + G    S+P    R G R GG     GGG  DG   GSR
Sbjct: 70  GQGSGGQSGGSDPYGQSRGGGR-GGFGGSRGGGGYDGGRGGSR 111


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -3

Query: 464 PRLQHGPPRVEPPRSNYTFXGAPFPPRAEVATPPVIGSERLRLQVPGWRP 315
           P +  GPP   PP       G P PP      PP+ G        PG  P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,934,394
Number of Sequences: 27780
Number of extensions: 253797
Number of successful extensions: 1011
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)