Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_I07
(1199 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 40 5e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.14
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.56
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.97
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.2
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 40.3 bits (90), Expect = 5e-04
Identities = 44/170 (25%), Positives = 46/170 (27%), Gaps = 14/170 (8%)
Frame = +2
Query: 722 PPXPPXXXXXXPPXXRXRXXPXAXXAPARXXXXXPPRXXXXXLXXXRPXPPPXXXXPPXP 901
PP PP PP R R P + PP P PP PP P
Sbjct: 311 PPPPP------PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Query: 902 P----------PPPXXRXRXPSGXXPXXXA----GAXGCPXXXXXXHXXXWPXXXXPXXX 1039
P PPP R S A A P P P
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 1040 LXAPSCXXXXSPPTHXXXXSRPXXAPXXXPXPPXXPRAPXAXXPRXPXPP 1189
AP +PP S P AP P PP P AP PP
Sbjct: 425 PSAPPSLPPSAPP------SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 34.3 bits (75), Expect = 0.034
Identities = 40/176 (22%), Positives = 46/176 (26%), Gaps = 6/176 (3%)
Frame = +2
Query: 677 GXPPXXXXQXKXXXXPPXPPXXXXXX-----PPXXRXRXXPXAXXAPARXXXXXPPRXXX 841
G PP PP PP PP R P + A PP
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS-APSTGRQPPPLSS 381
Query: 842 XXLXXXRPXPPPXXXXPPXPPPPPXXRX-RXPSGXXPXXXAGAXGCPXXXXXXHXXXWPX 1018
P PPP P PP R + P + P P
Sbjct: 382 SRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSL--------PP 433
Query: 1019 XXXPXXXLXAPSCXXXXSPPTHXXXXSRPXXAPXXXPXPPXXPRAPXAXXPRXPXP 1186
P + AP+ PP+ P P P PP P P A P P
Sbjct: 434 SAPPSLPMGAPAAPPL--PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 30.7 bits (66), Expect = 0.42
Identities = 33/152 (21%), Positives = 40/152 (26%), Gaps = 5/152 (3%)
Frame = +3
Query: 663 PPXXRXRPRPPRXXKXTXXPPPPPPXXXSXRLPXXXXAXXPRXXXPRXGXXXXXXXGXXV 842
PP R K PPPPP + P + P +
Sbjct: 294 PPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL 353
Query: 843 PXXLXXAPPPPLXXXXPPPXXPXXPXAXGXXXXXSPXXXRA--XXXAPXXP--XXPTXXS 1010
P APPPP P P + P A AP P + S
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 1011 GPXXXRXP-XXSXXXAAXPXXXPPXTPLXXPA 1103
P P + P PP P+ PA
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPA 445
Score = 28.3 bits (60), Expect = 2.2
Identities = 40/172 (23%), Positives = 47/172 (27%), Gaps = 6/172 (3%)
Frame = +3
Query: 609 PPXGGGGGGXXXGXXXXXPPXXRXRPRPPRXXKXTXXPPPPPP--XXXSXRLPXXXXAXX 782
PP G G PP P + PPPPPP + R P +
Sbjct: 325 PPIGNGSSNSSL-PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSR 383
Query: 783 PRXXXPRXGXXXXXXXGXXVP----XXLXXAPPPPLXXXXPPPXXPXXPXAXGXXXXXSP 950
P +P PP P PP P P + P
Sbjct: 384 AVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPS------APP 437
Query: 951 XXXRAXXXAPXXPXXPTXXSGPXXXRXPXXSXXXAAXPXXXPPXTPLXXPAP 1106
AP P P+ P P + AA P PP P PAP
Sbjct: 438 SLPMGAPAAP--PLPPSAPIAP-----PLPAGMPAAPP--LPPAAPAPPPAP 480
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 863 PXPPPXXXXPPXPPPPPXXRXRXPSGXXPXXXAGAXG 973
P P P PP PPPPP P P A + G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = +2
Query: 782 PXAXXAPARXXXXXPPRXXXXXLXXXRPXPPPXXXXPPXPPPPP 913
P A P P + P PPP PPPPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.2 bits (55), Expect = 9.0
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = -2
Query: 502 KXPPPXXXXFFFXXXPPPKXKKXXPPXXKKKKXPPAXKXGGXFFF*GGGPXPPXPP 335
K PPP P P PP PP G G GP PP PP
Sbjct: 730 KSPPPPPPAVIVPT-PAPAPIPVPPPAPIMGGPPPPPPPPGVA---GAGPPPPPPP 781
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.56
Identities = 24/85 (28%), Positives = 26/85 (30%), Gaps = 1/85 (1%)
Frame = +3
Query: 861 APPPPLXXXXPPPXXPXXPXAXGXXXXXSPXXXRAXXXAPXXPXXPTXXSGPXXXRXPXX 1040
APP P PP P P P A P P+ P P
Sbjct: 129 APPTPQSELRPPTSAPPRP------SIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 1041 SXXXA-AXPXXXPPXTPLXXPAPLS 1112
S A + P PP P P PLS
Sbjct: 183 SPPSAPSLPSAVPPMPPKVPPPPLS 207
Score = 27.1 bits (57), Expect = 5.2
Identities = 21/85 (24%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Frame = +2
Query: 665 PPXXGXPPXXXXQXKXXXXPPXPPXXXXXXPPXXRXRXXPXAXXAPARXXXXXPPRXXXX 844
PP PP + + PP PP P AP PP
Sbjct: 124 PPSAPAPPTPQSELR----PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA 179
Query: 845 XLXXXRPXPPPXXXXPPXPP--PPP 913
+ P PP PP PPP
Sbjct: 180 PVKSPPSAPSLPSAVPPMPPKVPPP 204
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.97
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 863 PXPPPXXXXPPXPPPPP 913
P PPP PP PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPP 27
Score = 29.5 bits (63), Expect = 0.97
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 863 PXPPPXXXXPPXPPPPP 913
P PPP P PPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPP 28
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 663 PPXXRXRPRPPRXXKXTXXPPPPPP 737
PP P PP + PPPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 847 PXSXAPXPPPXXXSPPXPXXPXXPP 921
P + P PPP PP P PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 684 PRPPRXXKXTXXPPPPPPXXXSXR 755
P PP + PPPPPP R
Sbjct: 13 PPPPGFEPPSQPPPPPPPGYVKKR 36
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 863 PXPPPXXXXPPXPPPPPXXRXRXPSGXXP 949
P PP PP PPPP PS P
Sbjct: 1718 PSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 863 PXPPPXXXXPPXPPPPPXXRXRXPSGXXPXXXAGA 967
P PPP P PP P PS P A +
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 5.2
Identities = 24/108 (22%), Positives = 28/108 (25%)
Frame = +2
Query: 863 PXPPPXXXXPPXPPPPPXXRXRXPSGXXPXXXAGAXGCPXXXXXXHXXXWPXXXXPXXXL 1042
P P P PP P P PS P A + G P +
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV 1200
Query: 1043 XAPSCXXXXSPPTHXXXXSRPXXAPXXXPXPPXXPRAPXAXXPRXPXP 1186
PS PP P + P P +AP P P
Sbjct: 1201 PKPSVGVPPVPPPSTAPPV-PTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 844 LPXSXAPXPPPXXXSPPXPXXPXXPPXXASXXXXPRA 954
LP + AP P +PP P PP S P A
Sbjct: 1026 LPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSA 1062
Score = 26.6 bits (56), Expect = 6.8
Identities = 25/109 (22%), Positives = 28/109 (25%), Gaps = 1/109 (0%)
Frame = +2
Query: 863 PXPPPXXXXPPXPPPPPXXRXRXPSGXXPXXXAGAXGCPXXXXXXHXXXWPXXXXPXXXL 1042
P P P PPP P PS P G P P +
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAP------SGAPPVPAPSGIPPVPKPSVAAPPV 1104
Query: 1043 XAPSCXXXXSP-PTHXXXXSRPXXAPXXXPXPPXXPRAPXAXXPRXPXP 1186
PS P P+ +P A P P P P P P
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,463
Number of Sequences: 5004
Number of extensions: 25708
Number of successful extensions: 317
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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