Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_I04
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    51   9e-07
Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical pr...    31   0.77 

>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +1

Query: 58  DFLTKK-QASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYDNFL 234
           D+L  K  A+   LA DW  L+EL+ KKLWHQLT+  +  VK P      ++ + Y  F+
Sbjct: 5   DYLNGKLAAANGPLADDWKNLKELWEKKLWHQLTVLTRSLVKKPQFVASTDMHEFYRLFV 64

Query: 235 TTFE 246
             +E
Sbjct: 65  AEWE 68


>Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical
           protein K07A12.3 protein.
          Length = 131

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 7   RIPENMATVKFAVIDVSDFLTKKQASEPALAADWAKLEELYNKKLWHQLTLK 162
           + P  +A +K   +   +    + A  PA+ ADWAKL++    K +  L++K
Sbjct: 26  QFPRRLAILK--AVGKHELAPPRSADIPAIKADWAKLQKFIETKQYVNLSIK 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,686,255
Number of Sequences: 27780
Number of extensions: 200639
Number of successful extensions: 465
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)