Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_I03
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   237   1e-63
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   237   2e-63
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   2.7  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   6.1  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    26   8.1  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  237 bits (580), Expect = 1e-63
 Identities = 118/219 (53%), Positives = 139/219 (63%)
 Frame = +3

Query: 126 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 305
           S+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESW
Sbjct: 9   SIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

Query: 306 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 485
           GTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSA 127

Query: 486 XXXTGVQHSFRLXDTLLKRFPNFPWXVADKVQEINKTKQAVIFLXRLKAWSDILKVYKSQ 665
              +GV          ++  P  P  V D VQ   KTK+AV  L  +KA+ D++KV  S+
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSR 187

Query: 666 RLRAGKGKMRNRRRISVRGPS*XSTRIRV*XGAFRXIPG 782
           +LRAGKGK+RNRR +  RGP            AFR IPG
Sbjct: 188 KLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPG 226


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  237 bits (579), Expect = 2e-63
 Identities = 117/219 (53%), Positives = 139/219 (63%)
 Frame = +3

Query: 126 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 305
           S+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESW
Sbjct: 9   SIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

Query: 306 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 485
           GTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASA 127

Query: 486 XXXTGVQHSFRLXDTLLKRFPNFPWXVADKVQEINKTKQAVIFLXRLKAWSDILKVYKSQ 665
              +GV          ++  P  P  V D VQ   KTK+AV  L  +KA+ D++KV  S+
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSR 187

Query: 666 RLRAGKGKMRNRRRISVRGPS*XSTRIRV*XGAFRXIPG 782
           +LRAGKGK+RNRR +  RGP            AFR IPG
Sbjct: 188 KLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPG 226


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 512 VQAXGHIIEKIPELPLXCSRQSPGDQQDQTGCH 610
           V+   H++EK+ E+ + C R       ++  CH
Sbjct: 259 VEETKHLLEKLTEVNVMCDRHMDAISSEELACH 291


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 176 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 271
           PV VQG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 604 ACLVLLISWTLSATXQGKFGNLF 536
           A LV L   T+ A   GKFGNLF
Sbjct: 63  AVLVDLEPGTMDAVKSGKFGNLF 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,299
Number of Sequences: 5004
Number of extensions: 58136
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)