Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_I03
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   213   1e-55
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    30   2.5  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  213 bits (521), Expect = 1e-55
 Identities = 115/237 (48%), Positives = 141/237 (59%)
 Frame = +3

Query: 126 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 305
           +VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESW
Sbjct: 8   TVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESW 66

Query: 306 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 485
           GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH               
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126

Query: 486 XXXTGVQHSFRLXDTLLKRFPNFPWXVADKVQEINKTKQAVIFLXRLKAWSDILKVYKSQ 665
              +G+    +    ++ +    P  V+DKV+   KTK+AV+FL R   W+DI KVY S+
Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSK 186

Query: 666 RLRAGKGKMRNRRRISVRGPS*XSTRIRV*XGAFRXIPGC*AS*MXTXLXLLKPGPG 836
           R RAGKGK+RNR+     GP     +      AFR IPG         L LLK  PG
Sbjct: 187 RNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVM-NVERLNLLKLAPG 242


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +3

Query: 243 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 413
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 414 PTKP 425
             KP
Sbjct: 197 APKP 200


>Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical
           protein C09G5.5 protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/43 (44%), Positives = 19/43 (44%)
 Frame = -1

Query: 869 GPXXRNGPX*PPGARFQXVQXGXHSGGSTPGDXPEGAXSXPDP 741
           GP  R GP  PPGA       G    GSTPG  P G    P P
Sbjct: 205 GPSGRPGPQGPPGA------PGQPGSGSTPG--PAGPPGPPGP 239


>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein
           20 protein.
          Length = 288

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -1

Query: 869 GPXXRNGPX*PPGARFQXVQXGXHSGGSTPGDXPEGAXSXPDP 741
           GP  R GP  PPG      + G   G   PG  P    S P P
Sbjct: 171 GPAGRGGPRGPPGPGGPQGEAGEDGGAGNPG-TPGQVRSLPSP 212


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 399 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 316
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 308 YRTCCRPNSACPWWWYS*VRSGC--LR*HVSWWTYVRPH 418
           YRTCC+    C ++++  + +GC   R   + + Y  PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,377,623
Number of Sequences: 27780
Number of extensions: 381740
Number of successful extensions: 1070
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)