Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_I01
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.008
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 0.11
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 30 0.44
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 28 1.8
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 26 5.4
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 26 5.4
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.2
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 7.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.062
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = +1
Query: 394 PPPXGGXXSXPPPPPGVXFXXXGXPPPXXV*XXXXGGGXXPPPPP 528
P P PPP P G PPP G G PPPPP
Sbjct: 742 PTPAPAPIPVPPPAP-----IMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 31.9 bits (69), Expect(2) = 0.008
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +1
Query: 418 SXPPPPPGVXFXXXGXPP-PXXV*XXXXGGGXXPPPPP 528
S PPPPP V P P GG PPPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +1
Query: 394 PPPXGGXXSXPPPPPGVXFXXXGXPPPXXV*XXXXGGGXXPPPP 525
P P G PPPPPGV PPP G P P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/64 (29%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Frame = +2
Query: 395 PPPXGGIXPXPPP-----PPXFXFXKXXPXXPXLXKXXXXGGAXXPPPPXXXXXXXXTXX 559
PPP I P P P PP P P G PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793
Query: 560 AGAP 571
A AP
Sbjct: 794 APAP 797
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Frame = +2
Query: 383 GXXTPPPXGGI---XPXPPPPP 439
G PPP G+ P PPPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPP 781
Score = 22.6 bits (46), Expect(2) = 0.008
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +1
Query: 637 PRPGXAXXGAVXXPRPPP 690
P PG A G P PPP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect(2) = 0.11
Identities = 30/115 (26%), Positives = 32/115 (27%)
Frame = +1
Query: 424 PPPPPGVXFXXXGXPPPXXV*XXXXGGGXXPPPPPXXXXXXXXTXGGGAXXAXGXXXXPA 603
PPPPP G PP + PPPPP G G P
Sbjct: 311 PPPPPPPSRRNRGKPP---IGNGSSNSSLPPPPPP----PRSNAAGSIPLPPQGRSAPPP 363
Query: 604 RXXXXGXGGXGPRPGXAXXGAVXXPRPPPXTRXXXXXPAXPXPPGRGGXXXSLPP 768
P + AV P PP PA P P G S PP
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP-PLGNAS-RTSTPP 416
Score = 27.5 bits (58), Expect = 2.3
Identities = 29/127 (22%), Positives = 33/127 (25%), Gaps = 2/127 (1%)
Frame = +1
Query: 394 PPPXGGXXSXPPPPPGVXFXXXGXPPPXXV*XXXXGGGXXPPPPPXXXXXXXXTXGGGAX 573
P P G + PPPPP PPP PP P G +
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411
Query: 574 XAXGXXXXPARXXXXGXGGXGP-RPGXAXXGAVXXPRPPPXTRXXXXXPA-XPXPPGRGG 747
+ P P P GA P PP PA P P
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Query: 748 XXXSLPP 768
+ PP
Sbjct: 472 AAPAPPP 478
Score = 22.2 bits (45), Expect(2) = 0.11
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 394 PPPXGGXXSXPPPPP 438
PPP G S PP P
Sbjct: 257 PPPSNGTVSSPPNSP 271
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 29.9 bits (64), Expect = 0.44
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 223 VRVHRADTGRSSNELDRQTTELERR 297
+R H+ GR+ ELDR+ T+L++R
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQR 42
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 41 YYSCYPFLLTCAIASAAECENATSLSLMIDSLLATY 148
+YSC P+LL I A+ C+ + S +ID L T+
Sbjct: 101 FYSCNPYLLFKGIC-ASSCQIDSYQSSLIDDALETF 135
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 292 VPTQSFVDPIHLKICQYPHGGL 227
+P Q+F H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 147 YVARSESIMRDSDVAFSHSAALAIAQVRRNG 55
Y ES + D+ + SH+ A +I Q R+G
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSG 93
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Frame = -1
Query: 523 GGGXXXPPPXXX----FXQXGXXGXPFXKXKXRGGGGXGXDXPPGGGG 392
GGG PPP F G G GGG G + PGG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG 241
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -1
Query: 526 GGGGXXXPPPXXXFXQXGXXGXPFXKXKXRGGGGXGXDXPPGGGG 392
GGG PP F G G GG G G GG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG 238
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +1
Query: 397 PPXGGXXSXPPPPPGVXFXXXGXPPPXXV*XXXXGGGXXPPPP 525
PP + PPPP V PPP G PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSV-------PPPPSAPPMPAGPPSAPPPP 1734
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2
Query: 407 GGIXPXPPPPP 439
GG+ P PPPPP
Sbjct: 303 GGLPPPPPPPP 313
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 398 PPXGGIXPXPPPPPXFXFXKXXPXXP 475
PP G P PPPPP F P P
Sbjct: 5 PP--GNPPPPPPPPGFEPPSQPPPPP 28
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 424 PPPPPGVXFXXXGXPPP 474
PPPPP F PPP
Sbjct: 10 PPPPPPPGFEPPSQPPP 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,952
Number of Sequences: 5004
Number of extensions: 46911
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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