Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_I01
(802 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 2.5
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 5.8
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 7.6
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 33.1 bits (72), Expect = 0.003
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +2
Query: 95 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 259
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 260 MNWIDKRLSW 289
+ W L+W
Sbjct: 88 LMWEQSHLTW 97
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.9
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 122 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 286
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 287 WN 292
WN
Sbjct: 118 WN 119
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.9
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 122 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 286
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 287 WN 292
WN
Sbjct: 118 WN 119
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWN 292
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWN 292
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWN 292
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWN 292
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWN 292
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWN 292
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.4 bits (48), Expect = 2.5
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 101 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 268
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 269 IDKRLSW 289
D RL++
Sbjct: 68 TDPRLAF 74
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.2 bits (45), Expect = 5.8
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 101 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 268
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 269 IDKRLSW 289
D RL++
Sbjct: 68 TDPRLAF 74
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.8 bits (44), Expect = 7.6
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 400 PXGGXXSXPPPPP 438
P G PPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,911
Number of Sequences: 438
Number of extensions: 7793
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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