Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_H22
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.18
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 32 0.72
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.2
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743... 30 2.2
12_01_0524 - 4167867-4168445 30 2.9
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 29 3.8
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 29 6.7
12_02_0581 - 20785198-20785962,20786107-20786649 28 8.9
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.9
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.9
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.18
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 343 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 179
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 31.9 bits (69), Expect = 0.72
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 434 NNGSVSWIKRLDISTPISMQLDNWPNDMQTCTVQVRVLGCTIVTKWI 574
+NG +S DI +S + +N+ + M T + Q + C VTKWI
Sbjct: 165 SNGDISNGSHHDIFKVVSFRRENFVDSMCTSSEQYDTIVCLSVTKWI 211
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 241 VRVHRANTDRSSNELDRQTTELERRGVGLQHLAGVLGTL 357
V+ H +R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>03_02_0762 -
10968888-10969466,10972522-10974175,10974277-10974359,
10974435-10974533,10974620-10974706,10974782-10974838,
10974939-10975065,10975344-10975465,10975685-10975732,
10975867-10976268
Length = 1085
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 487 YAVRQLAQRHADLHGSSSGSRMHNSDEMD 573
Y+ R+ QRH DLHGS S + D++D
Sbjct: 607 YSARRWQQRHDDLHGSHSMLKAEVCDDID 635
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.9 bits (64), Expect = 2.9
Identities = 30/97 (30%), Positives = 42/97 (43%)
Frame = -1
Query: 340 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 161
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 160 CEERVDHEGQ*CCVFAFCRTSYSTSEEKPVTE*YKSS 50
E V+ E + C A TS S E P+ + SS
Sbjct: 161 -VEEVEEEEEKECSSA---TS-SHESEAPIAQSMHSS 192
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -3
Query: 422 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNSFEDLSVFA 255
R RSPRR P R + + R+PA S +P+R++S + D+S A
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADSRSPADHERRDMSTAA 279
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 247 VHRANTDRSSNELDRQTTELERRGVG 324
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>12_02_0581 - 20785198-20785962,20786107-20786649
Length = 435
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 29 RSVVIKCRRLILFCYRFLL----TCAIASAAECENATSLSLMIDSL 154
RS++ KC+ L C F+L + I A C N S+SL ++ L
Sbjct: 208 RSLLGKCKSLEKLCLHFILGLTDSDMITLAQNCSNLRSISLQLEPL 253
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 76 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 216
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTP 339
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,844,774
Number of Sequences: 37544
Number of extensions: 484401
Number of successful extensions: 1528
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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