Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_H20
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   2.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   2.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   2.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.2  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
 Frame = -3

Query: 271 RPGEHARRLERDGAVPTNRPDRNRTLRTSQRCDVVACQGVAPYGSAVQCH--*PHHP 107
           RPGE+    +R+G  PT        + T   C    C      G   +     P HP
Sbjct: 399 RPGENPVTQKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTNGCTAELRKKEPPHP 455


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
 Frame = -3

Query: 271 RPGEHARRLERDGAVPTNRPDRNRTLRTSQRCDVVACQGVAPYGSAVQCH--*PHHP 107
           RPGE+    +R+G  PT        + T   C    C      G   +     P HP
Sbjct: 419 RPGENPVTQKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTNGCTAELRKKEPPHP 475


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
 Frame = -3

Query: 271 RPGEHARRLERDGAVPTNRPDRNRTLRTSQRCDVVACQGVAPYGSAVQCH--*PHHP 107
           RPGE+    +R+G  PT        + T   C    C      G   +     P HP
Sbjct: 368 RPGENPVTQKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTNGCTAELRKKEPPHP 424


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 311 YAWRCDLRSREEPRPGAAEVRAWKLESRR 397
           YAW  D    E  R    ++  WK E+ +
Sbjct: 56  YAWVLDKLKAERERGITIDIALWKFETAK 84


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 311 YAWRCDLRSREEPRPGAAEVRAWKLESRR 397
           YAW  D    E  R    ++  WK E+ +
Sbjct: 56  YAWVLDKLKAERERGITIDIALWKFETSK 84


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 569 HRPEGADAEVPPL 607
           HRP+  D  VPPL
Sbjct: 135 HRPDTKDLPVPPL 147


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 460 LDGPSPVGGVRQAARPRLEHGTPRFKLPRSNFRRAGT 350
           L  P    G  +    +L+   PR+K PR+ F    T
Sbjct: 135 LSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRAT 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,590
Number of Sequences: 438
Number of extensions: 4409
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)