Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_H19
         (925 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113391-1|AAI13392.1|  839|Homo sapiens RBM25 protein protein.        32   2.6  
BC113389-1|AAI13390.1|  839|Homo sapiens RBM25 protein protein.        32   2.6  
AK123158-1|BAC85544.1|  572|Homo sapiens protein ( Homo sapiens ...    32   2.6  
AF109907-1|AAC97961.1|  735|Homo sapiens S164 protein.                 32   2.6  
AC004858-3|AAF19255.1|  784|Homo sapiens WUGSC:H_DJ0687K01.2 pro...    32   2.6  

>BC113391-1|AAI13392.1|  839|Homo sapiens RBM25 protein protein.
          Length = 839

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 668 VRGRVPKTGHPDPDADASDHEVGTQRRRSSRPVKQQ 561
           +R R+   GHPDPDA+    E   +RRR  + +KQ+
Sbjct: 542 IRQRLLAEGHPDPDAELQRMEQEAERRRQPQ-IKQE 576


>BC113389-1|AAI13390.1|  839|Homo sapiens RBM25 protein protein.
          Length = 839

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 668 VRGRVPKTGHPDPDADASDHEVGTQRRRSSRPVKQQ 561
           +R R+   GHPDPDA+    E   +RRR  + +KQ+
Sbjct: 542 IRQRLLAEGHPDPDAELQRMEQEAERRRQPQ-IKQE 576


>AK123158-1|BAC85544.1|  572|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41163 fis, clone BRACE2039734. ).
          Length = 572

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 701 RK*ARKSTDHPVRGRVPKTGHPDPDADASDHEVGTQRRRSSRPVKQQ 561
           +K  +  T+ P    + KT  P P  +  D + G Q+RRSSR VK++
Sbjct: 468 KKVNKGKTEGPENSDLDKTPPPSPPPE-EDEDPGVQKRRSSRQVKRK 513


>AF109907-1|AAC97961.1|  735|Homo sapiens S164 protein.
          Length = 735

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 668 VRGRVPKTGHPDPDADASDHEVGTQRRRSSRPVKQQ 561
           +R R+   GHPDPDA+    E   +RRR  + +KQ+
Sbjct: 438 IRQRLLAEGHPDPDAELQRMEQEAERRRQPQ-IKQE 472


>AC004858-3|AAF19255.1|  784|Homo sapiens WUGSC:H_DJ0687K01.2
           protein.
          Length = 784

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 668 VRGRVPKTGHPDPDADASDHEVGTQRRRSSRPVKQQ 561
           +R R+   GHPDPDA+    E   +RRR  + +KQ+
Sbjct: 487 IRQRLLAEGHPDPDAELQRMEQEAERRRQPQ-IKQE 521


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,913,834
Number of Sequences: 237096
Number of extensions: 3119570
Number of successful extensions: 8205
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8176
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)