Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_H18
(1082 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 40 6e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.040
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.092
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.21
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.6
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 4.6
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 6.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 8.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 39.9 bits (89), Expect = 6e-04
Identities = 26/102 (25%), Positives = 30/102 (29%)
Frame = +3
Query: 204 TPGXXPPPPLXXAXKXTXLGGGEKIWXKXPPXXPXGGXPXKKKXXAXPPXXKXXKXRGGX 383
+P PP P+ + K P K PP + RG
Sbjct: 266 SPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRG-- 323
Query: 384 XPPXGXXKKXXXXXPPPPPPXFXXKXXXKXXFGGGXXPPPPP 509
PP G PPPPPP G PPPPP
Sbjct: 324 KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 34.7 bits (76), Expect = 0.023
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = +1
Query: 424 PPPPPPPXFXXKXXKXXXLGGGX---PPPPPXXKXXGGGGLXXXXGGGXPPXP 573
PPPPPPP + G PPPPP + G + G P P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363
Score = 32.7 bits (71), Expect = 0.092
Identities = 19/71 (26%), Positives = 21/71 (29%)
Frame = -1
Query: 692 KXXPPPPPPXXGXGXXKKKXXGGXXXXXXXXXXGXKKKXXGXGGXPPPXFXXSPPPPFXX 513
K PPPPPP K G + PP +PPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
Query: 512 XXGGGGGXPPP 480
G PPP
Sbjct: 368 SAPSTGRQPPP 378
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Frame = +3
Query: 429 PPPPPXFXXKXXXKXXFGGGXX----PPPPPXXXKXGGGA 536
PPPPP + K G G PPPPP G+
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS 350
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.9 bits (74), Expect = 0.040
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = +1
Query: 385 PPPXXXXKKXXXXPPPPPPPXFXXKXXKXXXLGGGXPPPPPXXKXXGGGG 534
P P PPPPPPP G G PPPPP GG
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP--------GVAGAGPPPPPPPPPAVSAGG 789
Score = 31.9 bits (69), Expect = 0.16
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 376 GGXPPPXXXXKKXXXXPPPPPPP 444
GG PPP PPPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781
Score = 31.5 bits (68), Expect = 0.21
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 373 GGGXPPPXXXXKKXXXXPPPPPPP 444
GG PPP PPPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 30.7 bits (66), Expect = 0.37
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +1
Query: 424 PPPPPPPXFXXKXXKXXXLGGGXPPPPPXXKXXGGGGLXXXXGGGXPPXP 573
PPPPPPP G PPPPP GG P P
Sbjct: 762 PPPPPPPGVAG--------AGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 30.3 bits (65), Expect = 0.49
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +3
Query: 426 PPPPPPXFXXKXXXKXXFGGGXXPPPPPXXXKXGGGA 536
PPPPPP G G PPPPP GG+
Sbjct: 761 PPPPPPP-------PGVAGAGPPPPPPPPPAVSAGGS 790
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 352 PXKXXKXGGGXPPPXXXXKKXXXXPPPPPPP 444
P G PPP PPPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Frame = +1
Query: 406 KKXXXXPPPPPPPXFXXKXXKXXXLG--------GGXPPPPPXXKXXGGG 531
+K PPPPPP + GG PPPPP G G
Sbjct: 725 QKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 385 PPPXXXXKKXXXXPPPPPPPXFXXKXXKXXXLGGGXPPPPP 507
PPP P P PPP +GG PPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPA--------PIMGGPPPPPPP 767
Score = 27.9 bits (59), Expect(2) = 0.42
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -1
Query: 557 PPPXFXXSPPPPFXXXXGGGGGXPPP 480
PP PPPP G G PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -1
Query: 557 PPPXFXXSPPPPFXXXXGGGGGXPPP 480
P P PPPP G G PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 558 PPPXXXXKPPPPXXFXXGGGGGXPPP 481
P P PPPP G G PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 558 PPPXXXXKPPPPXXFXXGGGGGXPPP 481
PP PPPP G G PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 558 PPPXXXXKPPPPXXFXXGGGGGXPPP 481
PPP PPP G G PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 21.0 bits (42), Expect(2) = 0.42
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 683 PPPPPP 666
PPPPPP
Sbjct: 732 PPPPPP 737
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.092
Identities = 27/79 (34%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Frame = -1
Query: 506 GGGGGXPPPK-------XXFXXXFXXKXGGGGGGGXXXXFFXXXXGGGXPPPXFXXFXGX 348
GGG G PPP F G GG GG F G G P F G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 347 XXXXXFFFXGGPPXGGXGG 291
F GGP GG GG
Sbjct: 254 FGGGPGGFGGGP--GGHGG 270
Score = 26.2 bits (55), Expect = 8.0
Identities = 21/62 (33%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Frame = -3
Query: 507 GGGGGXPPPQXXXFXXF-----XXKXRGGGG--GGXXXXFFXXXRGGGXPPPXFXXFXGX 349
GGG G PPP F F GG G GG F G G P F G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 348 XG 343
G
Sbjct: 254 FG 255
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.21
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 373 GGGXPPPXXXXKKXXXXPPPPPPPXFXXK 459
G PPP + PPPPPPP + K
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 376 GGXPPPXXXXKKXXXXPPPPPPPXFXXKXXK 468
G PPP PPPPPP K K
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = +1
Query: 424 PPPPPPPXFXXKXXKXXXLGGGXP--PPPP 507
P PPPPP + G P PPPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 388 PPXXXXKKXXXXPPPPPPP 444
PP KK PP PPPP
Sbjct: 214 PPKFRHKKVPRGPPSPPPP 232
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -3
Query: 507 GGGGGXPPPQXXXFXXFXXKXRGGGGGGXXXXFFXXXRGG 388
GG GG + F RGG GGG F RGG
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 424 PPPPPPPXFXXKXXKXXXLG 483
PPPPPPP K LG
Sbjct: 371 PPPPPPPELLNHSPKSRPLG 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.156 0.564
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,521
Number of Sequences: 5004
Number of extensions: 48547
Number of successful extensions: 421
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 569764052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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