Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_H09
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0042 - 12731228-12731362,12731984-12732046,12732136-127322...    36   0.032
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     30   2.8  
03_06_0014 - 31012116-31012229,31012773-31012985,31013058-310131...    29   6.4  
12_02_0704 - 22293955-22294255,22294276-22294602,22294794-222948...    28   8.4  
11_06_0130 - 20408835-20411771                                         28   8.4  
10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184...    28   8.4  

>07_03_0042 -
           12731228-12731362,12731984-12732046,12732136-12732207,
           12732783-12732855,12732937-12733005,12733375-12733439,
           12733677-12734087,12734186-12734230,12734338-12734413,
           12734555-12734629,12735101-12735207,12736573-12736635
          Length = 417

 Score = 36.3 bits (80), Expect = 0.032
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = +2

Query: 179 TSFYLVFNKIMSTLKLTSEVGSGLYSHWRDVFEHVRSTAKKKH--YADQNTSSGTPQERE 352
           TS Y +FNK+ STL   S V SG ++  RD    V + AK+ +  + D+ +SS + ++R 
Sbjct: 164 TSGYTLFNKLRSTLSSASPVLSGAFAKLRDT--RVSTYAKQGYEIFKDELSSSSSRKKRN 221

Query: 353 CSIRKSCNNVSVTSMEDL 406
            +   S   V  ++  +L
Sbjct: 222 HARHASAGTVEKSTRTEL 239


>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 308 YADQNTSSGTPQERECSIRKSCN-NVSVTSMEDLSHEE 418
           + D   SSG+P   E S+ K C+ ++S TS  D  ++E
Sbjct: 523 HEDMQASSGSPDGSEPSVNKICDGSISWTSRNDFEYKE 560


>03_06_0014 -
           31012116-31012229,31012773-31012985,31013058-31013171,
           31013909-31014040,31014624-31014692,31014763-31015017,
           31015347-31015520,31016104-31016280,31016999-31017107,
           31017343-31017506,31018221-31018517
          Length = 605

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 221 KLTSEVGSGLYSHWRDVFEHVRSTAKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSME 400
           KLT++  SG Y+  R        T K + + D+N      +ERE   +    N+  +S  
Sbjct: 371 KLTTDFFSGAYAITRKASTEDEKTIKMQTWIDENDPEKVKEERE---KAEGENIRASSSL 427

Query: 401 DLSHEEIVTSY 433
               E++   Y
Sbjct: 428 QRKREQVKRKY 438


>12_02_0704 -
           22293955-22294255,22294276-22294602,22294794-22294840,
           22297252-22297316,22297439-22297541
          Length = 280

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
 Frame = +2

Query: 182 SFYLVFNKIMSTLKLTSEVGSGLYSHW---RDVFEHVRSTAKKKHYADQNTSSGTPQERE 352
           + Y + + + +TLK       GL + W   ++ FE  ++T   +  A+Q  +  +  E  
Sbjct: 129 AMYFLRHHLCATLKNEHMATKGLLTLWTTLKEWFEKRKNTTLPQ--AEQEWAHLSVTEYN 186

Query: 353 CSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFT 487
            ++ + C N+S++       E+I  +    H++     R+H   T
Sbjct: 187 SALHQICINLSLSGKVVTDKEKIEKTLSTFHLSAMHSTRNHRRMT 231


>11_06_0130 - 20408835-20411771
          Length = 978

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +3

Query: 387 LPRWKI*ATKKSSHLTFWLMLPSLTVDVITWRLLTEIQHVTSYCKKLRQVQISSETSI 560
           LP+  + +TKK  H    ++L +LTV +++   +  + ++   C K R+ ++ + TSI
Sbjct: 715 LPQCSLKSTKKKKHQ---ILLIALTVCLVSTLAIFSLLYMLLTCHKRRKKEVPAMTSI 769


>10_08_0364 +
           17217631-17217833,17218134-17218308,17218391-17218474,
           17218561-17218802,17218883-17219108,17219246-17219325,
           17219408-17219492,17219665-17219796,17219927-17220040,
           17220123-17220170,17220413-17220497,17220722-17220834
          Length = 528

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 299 KKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHM 478
           +KHY +Q  +    +ER CS+ K   + +V+  E      IV  +          +RH M
Sbjct: 52  EKHYKEQMKNLQDRKERRCSLEKKLADANVSEEE---QHNIVKQFEKKETEYMRMQRHKM 108

Query: 479 A 481
           +
Sbjct: 109 S 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,260,814
Number of Sequences: 37544
Number of extensions: 402262
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)